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BioC 3.0: CHECK report for RTN on perceval

This page was generated on 2015-04-10 09:58:30 -0700 (Fri, 10 Apr 2015).

Package 784/933HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RTN 1.4.1
Mauro Castro
Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/RTN
Last Changed Rev: 96345 / Revision: 102249
Last Changed Date: 2014-11-02 05:29:56 -0800 (Sun, 02 Nov 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK [ OK ] OK 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: RTN
Version: 1.4.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch RTN_1.4.1.tar.gz
StartedAt: 2015-04-10 06:02:49 -0700 (Fri, 10 Apr 2015)
EndedAt: 2015-04-10 06:08:14 -0700 (Fri, 10 Apr 2015)
EllapsedTime: 325.5 seconds
RetCode: 0
Status:  OK 
CheckDir: RTN.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch RTN_1.4.1.tar.gz
###
##############################################################################
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* using log directory ‘/Users/biocbuild/bbs-3.0-bioc/meat/RTN.Rcheck’
* using R version 3.1.3 (2015-03-09)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RTN/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RTN’ version ‘1.4.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RTN’ can be installed ... [26s/30s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [24s/25s] OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘runTests.R’ [13s/13s]
 [13s/13s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

RTN.Rcheck/00install.out:

* installing *source* package ‘RTN’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RTN)

RTN.Rcheck/RTN-Ex.timings:

nameusersystemelapsed
AVS-class0.0010.0000.001
RTN.data0.4610.0350.497
TNA-class0.0000.0000.001
TNI-class0.4940.0150.509
avs.evse0.0000.0010.001
avs.get0.0010.0000.001
avs.plot10.0010.0000.000
avs.plot2000
avs.preprocess0.0010.0000.001
avs.vse0.0010.0000.001
tna.get0.8490.0200.870
tna.graph0.4140.0180.431
tna.gsea10.4610.0170.479
tna.gsea20.4800.0190.500
tna.mra0.4290.0170.446
tna.overlap0.8750.0160.892
tna.plot.gsea10.4220.0150.437
tna.plot.gsea20.4660.0200.488
tna.shadow0.4600.0210.482
tna.synergy0.4500.0170.468
tni.bootstrap0.4130.0150.427
tni.conditional0.4420.0170.458
tni.dpi.filter0.4430.0170.461
tni.get0.4700.0180.488
tni.graph0.8930.0190.912
tni.permutation0.4330.0180.455
tni.preprocess1.1420.0781.223
tni2tna.preprocess0.9300.0220.952