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BioC 3.0: INSTALL report for DNAcopy on oaxaca

This page was generated on 2015-04-10 10:01:20 -0700 (Fri, 10 Apr 2015).

Package 248/933HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DNAcopy 1.40.0
Venkatraman E. Seshan
Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/DNAcopy
Last Changed Rev: 95439 / Revision: 102249
Last Changed Date: 2014-10-13 14:38:33 -0700 (Mon, 13 Oct 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64 [ OK ] OK  OK  OK 

Summary

Package: DNAcopy
Version: 1.40.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL DNAcopy
StartedAt: 2015-04-09 17:07:19 -0700 (Thu, 09 Apr 2015)
EndedAt: 2015-04-09 17:07:24 -0700 (Thu, 09 Apr 2015)
EllapsedTime: 5.0 seconds
RetCode: 0
Status:  OK 

Command output

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###
### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL DNAcopy
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.1/Resources/library’
* installing *source* package ‘DNAcopy’ ...
** libs
gfortran-4.8   -fPIC  -g -O2 -Wall  -c cbsWtstats.f -o cbsWtstats.o
cbsWtstats.f: In function ‘wtmaxo’:
cbsWtstats.f:283:0: warning: ‘tmaxj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
       iseg(2) = tmaxj
 ^
cbsWtstats.f:282:0: warning: ‘tmaxi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
       iseg(1) = tmaxi
 ^
gfortran-4.8   -fPIC  -g -O2 -Wall  -c cbststats.f -o cbststats.o
cbststats.f: In function ‘tmaxo’:
cbststats.f:258:0: warning: ‘sxmxi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
                      tmaxj = sxmxi + i2j
 ^
gfortran-4.8   -fPIC  -g -O2 -Wall  -c changepoints-wtd.f -o changepoints-wtd.o
gfortran-4.8   -fPIC  -g -O2 -Wall  -c changepoints.f -o changepoints.o
gfortran-4.8   -fPIC  -g -O2 -Wall  -c esegment.f -o esegment.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c flchoose.c -o flchoose.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c fphyper.c -o fphyper.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c fpnorm.c -o fpnorm.o
gfortran-4.8   -fPIC  -g -O2 -Wall  -c getbdry.f -o getbdry.o
gfortran-4.8   -fPIC  -g -O2 -Wall  -c prune.f -o prune.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c rshared.c -o rshared.o
gfortran-4.8   -fPIC  -g -O2 -Wall  -c segmentp.f -o segmentp.o
gfortran-4.8   -fPIC  -g -O2 -Wall  -c smoothCNA.f -o smoothCNA.o
gfortran-4.8   -fPIC  -g -O2 -Wall  -c tailprobs.f -o tailprobs.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o DNAcopy.so cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o smoothCNA.o tailprobs.o -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.1/Resources/library/DNAcopy/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DNAcopy)