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Package 173/514HostnameOS / ArchBUILDCHECKBUILD BIN
flowQ 1.14.1
M.Jiang
Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/flowQ
Last Changed Rev: 61509 / Revision: 64395
Last Changed Date: 2011-12-20 15:37:13 -0800 (Tue, 20 Dec 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: flowQ
Version: 1.14.1
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch flowQ_1.14.1.tar.gz
StartedAt: 2012-03-24 01:00:19 -0700 (Sat, 24 Mar 2012)
EndedAt: 2012-03-24 01:05:42 -0700 (Sat, 24 Mar 2012)
EllapsedTime: 323.2 seconds
RetCode: 0
Status:  OK 
CheckDir: flowQ.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.9-bioc/meat/flowQ.Rcheck'
* using R version 2.14.2 (2012-02-29)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'flowQ/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowQ' version '1.14.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'flowQ' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
evaluateProcess: multiple local function definitions for 'efun' with
  different formal arguments
qaProcess.2DStatsPlot: no visible binding for global variable 'Aliquot'
qaProcess.DensityPlot: no visible binding for global variable 'Aliquot'
qaProcess.ECDFPlot: no visible binding for global variable 'Aliquot'
* checking Rd files ... NOTE
prepare_Rd: normalizeSets.Rd:44-51: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

flowQ.Rcheck/00install.out:

* installing *source* package 'flowQ' ...
** R
** data
** inst
** preparing package for lazy loading
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)
Warning: replacing previous import '.__C__character' when loading 'methods'

--------

for references have a look at
citation('robCompositions')    
--------

Warning in .simpleDuplicateClass(def, prev) :
  A specification for S3 class "connection" in package 'IRanges' seems equivalent to one from package 'graph' and is not turning on duplicate class definitions for this class
Warning in .simpleDuplicateClass(def, prev) :
  A specification for S3 class "file" in package 'IRanges' seems equivalent to one from package 'graph' and is not turning on duplicate class definitions for this class
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'DataQualityAssessment.Rnw' 
   'Extending-flowQ.Rnw' 
** testing if installed package can be loaded
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)

--------

for references have a look at
citation('robCompositions')    
--------

Warning message:
replacing previous import '.__C__character' when loading 'methods' 

* DONE (flowQ)

flowQ.Rcheck/flowQ-Ex.timings:

nameusersystemelapsed
aggregatorList-class0.0250.0010.027
binaryAggregator-class0.0000.0010.001
discreteAggregator-class0.0000.0000.001
evaluateProcess0.0000.0000.001
factorAggregator-class0.0000.0000.001
flowQ-package000
numericAggregator-class0.0010.0000.001
outlier-class0.0010.0000.001
outlierResult-class0.0000.0010.000
qaAggregator-class0.0010.0000.001
qaGraph-class0.0000.0010.001
qaGraphList-class0.0010.0000.002
qaProcess-class0.0010.0010.001
qaProcess.2DStatsPlot14.461 2.99317.843
qaProcess.BoundaryPlot7.3991.5649.088
qaProcess.DensityPlot13.633 2.48816.345
qaProcess.ECDFPlot13.864 2.70817.411
qaProcess.KLDistPlot11.517 2.14415.038
qaProcess.cellnumber0.0010.0000.000
qaProcess.marginevents0.0000.0000.001
qaProcess.timeflow0.0000.0000.001
qaProcess.timeline0.0010.0000.000
qaProcessFrame-class0.0010.0000.001
qaReport0.0010.0000.001
rangeAggregator-class0.0010.0000.002
stringAggregator-class0.0010.0010.002
txtFormatQAObject3.7881.4205.335
writeQAReport0.0000.0010.001
writeQATextReport0.0010.0000.000