rtracklayer 1.13.7
Michael Lawrence
| Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/rtracklayer | | Last Changed Rev: 56526 / Revision: 56603 | | Last Changed Date: 2011-07-03 16:07:11 -0700 (Sun, 03 Jul 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | ERROR | skipped | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | ERROR | skipped | skipped |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | ERROR | skipped | skipped |
| moscato1 | Windows Server 2008 R2 Enterprise (64-bit) / x64 | [ ERROR ] | skipped | skipped |
| pitt | Mac OS X Leopard (10.5.8) / i386 | ERROR | skipped | skipped |
* checking for file 'rtracklayer/DESCRIPTION' ... OK
* preparing 'rtracklayer':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
-----------------------------------
* installing *source* package 'rtracklayer' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
gcc -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c IRanges_stubs.c -o IRanges_stubs.o
gcc -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c R_init_rtracklayer.c -o R_init_rtracklayer.o
gcc -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c bigWig.c -o bigWig.o
bigWig.c: In function 'BWGFile_query':
bigWig.c:189:32: warning: 'ans_score' may be used uninitialized in this function
gcc -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c chain_io.c -o chain_io.o
chain_io.c: In function 'read_chain_file':
chain_io.c:34:7: warning: 'tstart' may be used uninitialized in this function
chain_io.c:34:15: warning: 'qstart' may be used uninitialized in this function
chain_io.c:35:48: warning: 'trc' may be used uninitialized in this function
chain_io.c:35:53: warning: 'qrc' may be used uninitialized in this function
chain_io.c:36:15: warning: 'block' may be used uninitialized in this function
chain_io.c:39:24: warning: 'header_line' may be used uninitialized in this function
gcc -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ucsc/bPlusTree.c -o ucsc/bPlusTree.o
gcc -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ucsc/bbiRead.c -o ucsc/bbiRead.o
ucsc/bbiRead.c: In function 'bbiSummaryArrayExtended':
ucsc/bbiRead.c:552:1: warning: implicit declaration of function 'bzero'
ucsc/bbiRead.c:552:1: warning: incompatible implicit declaration of built-in function 'bzero'
gcc -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ucsc/bbiWrite.c -o ucsc/bbiWrite.o
gcc -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ucsc/bwgCreate.c -o ucsc/bwgCreate.o
gcc -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ucsc/bwgQuery.c -o ucsc/bwgQuery.o
gcc -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ucsc/cirTree.c -o ucsc/cirTree.o
ucsc/cirTree.c: In function 'rTreeFromChromRangeArray':
ucsc/cirTree.c:234:1: warning: unknown conversion type character 'l' in format
ucsc/cirTree.c:234:1: warning: too many arguments for format
ucsc/cirTree.c: In function 'writeTreeToOpenFile':
ucsc/cirTree.c:315:5: warning: unknown conversion type character 'l' in format
ucsc/cirTree.c:315:5: warning: too many arguments for format
ucsc/cirTree.c:330:9: warning: unknown conversion type character 'l' in format
ucsc/cirTree.c:330:9: warning: unknown conversion type character 'l' in format
ucsc/cirTree.c:330:9: warning: format '%d' expects type 'int', but argument 2 has type 'long long unsigned int'
ucsc/cirTree.c:330:9: warning: format '%s' expects type 'char *', but argument 3 has type 'long long unsigned int'
ucsc/cirTree.c:330:9: warning: too many arguments for format
ucsc/cirTree.c: In function 'rFindOverlappingBlocks':
ucsc/cirTree.c:497:1: warning: unknown conversion type character 'l' in format
ucsc/cirTree.c:497:1: warning: format '%u' expects type 'unsigned int', but argument 3 has type 'long long unsigned int'
ucsc/cirTree.c:497:1: warning: too many arguments for format
gcc -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ucsc/common.c -o ucsc/common.o
ucsc/common.c: In function 'mustWrite':
ucsc/common.c:1835:5: warning: unknown conversion type character 'l' in format
ucsc/common.c:1835:5: warning: format '%s' expects type 'char *', but argument 2 has type 'long long int'
ucsc/common.c:1835:5: warning: too many arguments for format
ucsc/common.c: In function 'mustRead':
ucsc/common.c:1846:2: warning: unknown conversion type character 'l' in format
ucsc/common.c:1846:2: warning: format '%s' expects type 'char *', but argument 2 has type 'long long int'
ucsc/common.c:1846:2: warning: too many arguments for format
ucsc/common.c:1848:2: warning: unknown conversion type character 'l' in format
ucsc/common.c:1848:2: warning: too many arguments for format
ucsc/common.c: In function 'fileOffsetSizeMerge':
ucsc/common.c:2069:9: warning: unknown conversion type character 'l' in format
ucsc/common.c:2069:9: warning: unknown conversion type character 'l' in format
ucsc/common.c:2069:9: warning: too many arguments for format
ucsc/common.c: In function 'safecpy':
ucsc/common.c:2505:5: warning: unknown conversion type character 'l' in format
ucsc/common.c:2505:5: warning: unknown conversion type character 'l' in format
ucsc/common.c:2505:5: warning: too many arguments for format
ucsc/common.c: In function 'safencpy':
ucsc/common.c:2514:5: warning: unknown conversion type character 'l' in format
ucsc/common.c:2514:5: warning: unknown conversion type character 'l' in format
ucsc/common.c:2514:5: warning: too many arguments for format
ucsc/common.c: In function 'safecat':
ucsc/common.c:2528:5: warning: unknown conversion type character 'l' in format
ucsc/common.c:2528:5: warning: unknown conversion type character 'l' in format
ucsc/common.c:2528:5: warning: too many arguments for format
ucsc/common.c: In function 'safencat':
ucsc/common.c:2537:5: warning: unknown conversion type character 'l' in format
ucsc/common.c:2537:5: warning: unknown conversion type character 'l' in format
ucsc/common.c:2537:5: warning: too many arguments for format
ucsc/common.c: In function 'byteSwap64':
ucsc/common.c:2169:21: warning: array subscript is above array bounds
ucsc/common.c:2170:21: warning: array subscript is above array bounds
ucsc/common.c:2171:21: warning: array subscript is above array bounds
ucsc/common.c:2172:21: warning: array subscript is above array bounds
ucsc/common.c:2173:8: warning: array subscript is above array bounds
ucsc/common.c:2174:8: warning: array subscript is above array bounds
ucsc/common.c:2175:8: warning: array subscript is above array bounds
ucsc/common.c:2176:8: warning: array subscript is above array bounds
ucsc/common.c: In function 'readBits64':
ucsc/common.c:2169:21: warning: array subscript is above array bounds
ucsc/common.c:2170:21: warning: array subscript is above array bounds
ucsc/common.c:2171:21: warning: array subscript is above array bounds
ucsc/common.c:2172:21: warning: array subscript is above array bounds
ucsc/common.c:2173:8: warning: array subscript is above array bounds
ucsc/common.c:2174:8: warning: array subscript is above array bounds
ucsc/common.c:2175:8: warning: array subscript is above array bounds
ucsc/common.c:2176:8: warning: array subscript is above array bounds
ucsc/common.c: In function 'memReadBits64':
ucsc/common.c:2169:21: warning: array subscript is above array bounds
ucsc/common.c:2170:21: warning: array subscript is above array bounds
ucsc/common.c:2171:21: warning: array subscript is above array bounds
ucsc/common.c:2172:21: warning: array subscript is above array bounds
ucsc/common.c:2173:8: warning: array subscript is above array bounds
ucsc/common.c:2174:8: warning: array subscript is above array bounds
ucsc/common.c:2175:8: warning: array subscript is above array bounds
ucsc/common.c:2176:8: warning: array subscript is above array bounds
ucsc/common.c: In function 'byteSwapDouble':
ucsc/common.c:2273:21: warning: array subscript is above array bounds
ucsc/common.c:2274:21: warning: array subscript is above array bounds
ucsc/common.c:2275:21: warning: array subscript is above array bounds
ucsc/common.c:2276:21: warning: array subscript is above array bounds
ucsc/common.c:2277:8: warning: array subscript is above array bounds
ucsc/common.c:2278:8: warning: array subscript is above array bounds
ucsc/common.c:2279:8: warning: array subscript is above array bounds
ucsc/common.c:2280:8: warning: array subscript is above array bounds
ucsc/common.c: In function 'readDouble':
ucsc/common.c:2273:21: warning: array subscript is above array bounds
ucsc/common.c:2274:21: warning: array subscript is above array bounds
ucsc/common.c:2275:21: warning: array subscript is above array bounds
ucsc/common.c:2276:21: warning: array subscript is above array bounds
ucsc/common.c:2277:8: warning: array subscript is above array bounds
ucsc/common.c:2278:8: warning: array subscript is above array bounds
ucsc/common.c:2279:8: warning: array subscript is above array bounds
ucsc/common.c:2280:8: warning: array subscript is above array bounds
ucsc/common.c: In function 'memReadDouble':
ucsc/common.c:2273:21: warning: array subscript is above array bounds
ucsc/common.c:2274:21: warning: array subscript is above array bounds
ucsc/common.c:2275:21: warning: array subscript is above array bounds
ucsc/common.c:2276:21: warning: array subscript is above array bounds
ucsc/common.c:2277:8: warning: array subscript is above array bounds
ucsc/common.c:2278:8: warning: array subscript is above array bounds
ucsc/common.c:2279:8: warning: array subscript is above array bounds
ucsc/common.c:2280:8: warning: array subscript is above array bounds
gcc -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ucsc/errabort.c -o ucsc/errabort.o
gcc -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ucsc/hash.c -o ucsc/hash.o
gcc -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ucsc/linefile.c -o ucsc/linefile.o
ucsc/linefile.c:34:15: warning: 'getDecompressor' defined but not used
ucsc/linefile.c:102:15: warning: 'headerBytes' defined but not used
gcc -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ucsc/localmem.c -o ucsc/localmem.o
ucsc/localmem.c: In function 'newBlock':
ucsc/localmem.c:39:5: warning: unknown conversion type character 'l' in format
ucsc/localmem.c:39:5: warning: too many arguments for format
gcc -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ucsc/sqlNum.c -o ucsc/sqlNum.o
gcc -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ucsc/zlibFace.c -o ucsc/zlibFace.o
ucsc/zlibFace.c: In function 'zCompress':
ucsc/zlibFace.c:49:6: warning: unknown conversion type character 'l' in format
ucsc/zlibFace.c:49:6: warning: format '%s' expects type 'char *', but argument 2 has type 'long long int'
ucsc/zlibFace.c:49:6: warning: too many arguments for format
ucsc/zlibFace.c: In function 'zUncompress':
ucsc/zlibFace.c:70:6: warning: unknown conversion type character 'l' in format
ucsc/zlibFace.c:70:6: warning: format '%s' expects type 'char *', but argument 2 has type 'long long int'
ucsc/zlibFace.c:70:6: warning: too many arguments for format
gcc -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ucsc/dystring.c -o ucsc/dystring.o
gcc -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ucsc/hmmstats.c -o ucsc/hmmstats.o
gcc -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ucsc/obscure.c -o ucsc/obscure.o
ucsc/obscure.c: In function 'stringToSlNames':
ucsc/obscure.c:469:21: warning: 'e' may be used uninitialized in this function
gcc -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ucsc/pipeline.c -o ucsc/pipeline.o
gcc -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ucsc/rangeTree.c -o ucsc/rangeTree.o
gcc -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ucsc/rbTree.c -o ucsc/rbTree.o
gcc -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ucsc/memalloc.c -o ucsc/memalloc.o
ucsc/memalloc.c: In function 'needLargeMem':
ucsc/memalloc.c:91:10: warning: unknown conversion type character 'l' in format
ucsc/memalloc.c:91:10: warning: unknown conversion type character 'l' in format
ucsc/memalloc.c:91:10: warning: too many arguments for format
ucsc/memalloc.c:94:14: warning: unknown conversion type character 'l' in format
ucsc/memalloc.c:94:14: warning: format '%d' expects type 'int', but argument 2 has type 'long long unsigned int'
ucsc/memalloc.c:94:14: warning: too many arguments for format
ucsc/memalloc.c: In function 'needLargeMemResize':
ucsc/memalloc.c:114:10: warning: unknown conversion type character 'l' in format
ucsc/memalloc.c:114:10: warning: unknown conversion type character 'l' in format
ucsc/memalloc.c:114:10: warning: too many arguments for format
ucsc/memalloc.c:117:14: warning: unknown conversion type character 'l' in format
ucsc/memalloc.c:117:14: warning: format '%d' expects type 'int', but argument 2 has type 'long long unsigned int'
ucsc/memalloc.c:117:14: warning: too many arguments for format
ucsc/memalloc.c: In function 'needHugeMem':
ucsc/memalloc.c:139:14: warning: unknown conversion type character 'l' in format
ucsc/memalloc.c:139:14: warning: format '%d' expects type 'int', but argument 2 has type 'long long unsigned int'
ucsc/memalloc.c:139:14: warning: too many arguments for format
ucsc/memalloc.c: In function 'needHugeMemResize':
ucsc/memalloc.c:161:2: warning: unknown conversion type character 'l' in format
ucsc/memalloc.c:161:2: warning: format '%d' expects type 'int', but argument 2 has type 'long long unsigned int'
ucsc/memalloc.c:161:2: warning: too many arguments for format
ucsc/memalloc.c: In function 'needMem':
ucsc/memalloc.c:187:10: warning: unknown conversion type character 'l' in format
ucsc/memalloc.c:187:10: warning: unknown conversion type character 'l' in format
ucsc/memalloc.c:187:10: warning: too many arguments for format
ucsc/memalloc.c:190:14: warning: unknown conversion type character 'l' in format
ucsc/memalloc.c:190:14: warning: format '%d' expects type 'int', but argument 2 has type 'long long unsigned int'
ucsc/memalloc.c:190:14: warning: too many arguments for format
ucsc/memalloc.c: In function 'carefulFree':
ucsc/memalloc.c:318:14: warning: unknown conversion type character 'l' in format
ucsc/memalloc.c:318:14: warning: too many arguments for format
ucsc/memalloc.c:322:14: warning: unknown conversion type character 'l' in format
ucsc/memalloc.c:322:14: warning: too many arguments for format
ucsc/memalloc.c: In function 'carefulCheckHeap':
ucsc/memalloc.c:360:18: warning: unknown conversion type character 'l' in format
ucsc/memalloc.c:360:18: warning: too many arguments for format
ucsc/memalloc.c:364:18: warning: unknown conversion type character 'l' in format
ucsc/memalloc.c:364:18: warning: too many arguments for format
gcc -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ucsc/dlist.c -o ucsc/dlist.o
gcc -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ucsc/udc.c -o ucsc/udc.o
ucsc/udc.c: In function 'udcDataViaLocal':
ucsc/udc.c:188:1: warning: unknown conversion type character 'l' in format
ucsc/udc.c:188:1: warning: format '%s' expects type 'char *', but argument 4 has type 'long long unsigned int'
ucsc/udc.c:188:1: warning: too many arguments for format
ucsc/udc.c:195:5: warning: unknown conversion type character 'l' in format
ucsc/udc.c:195:5: warning: too many arguments for format
ucsc/udc.c: In function 'udcDataViaSlow':
ucsc/udc.c:244:1: warning: unknown conversion type character 'l' in format
ucsc/udc.c:244:1: warning: format '%s' expects type 'char *', but argument 4 has type 'long long unsigned int'
ucsc/udc.c:244:1: warning: too many arguments for format
ucsc/udc.c:262:2: warning: unknown conversion type character 'l' in format
ucsc/udc.c:262:2: warning: too many arguments for format
ucsc/udc.c: In function 'udcNewCreateBitmapAndSparse':
ucsc/udc.c:439:7: warning: unknown conversion type character 'l' in format
ucsc/udc.c:439:7: warning: format '%d' expects type 'int', but argument 3 has type 'long long int'
ucsc/udc.c:439:7: warning: too many arguments for format
ucsc/udc.c: In function 'fetchMissingBlocks':
ucsc/udc.c:994:4: warning: unknown conversion type character 'l' in format
ucsc/udc.c:994:4: warning: format '%s' expects type 'char *', but argument 2 has type 'long long unsigned int'
ucsc/udc.c:994:4: warning: unknown conversion type character 'l' in format
ucsc/udc.c:994:4: warning: format '%d' expects type 'int', but argument 3 has type 'char *'
ucsc/udc.c:994:4: warning: too many arguments for format
gcc -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ucsc/net.c -o ucsc/net.o
gcc -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ucsc/bits.c -o ucsc/bits.o
gcc -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ucsc/_cheapcgi.c -o ucsc/_cheapcgi.o
gcc -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ucsc/internet.c -o ucsc/internet.o
gcc -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ucsc/https.c -o ucsc/https.o
gcc -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ucsc/base64.c -o ucsc/base64.o
gcc -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ucsc/verbose.c -o ucsc/verbose.o
gcc -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ucsc/os.c -o ucsc/os.o
gcc -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ucsc/wildcmp.c -o ucsc/wildcmp.o
gcc -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ucsc/_portimpl.c -o ucsc/_portimpl.o
gcc -shared -s -static-libgcc -o rtracklayer.dll tmp.def IRanges_stubs.o R_init_rtracklayer.o bigWig.o chain_io.o ucsc/bPlusTree.o ucsc/bbiRead.o ucsc/bbiWrite.o ucsc/bwgCreate.o ucsc/bwgQuery.o ucsc/cirTree.o ucsc/common.o ucsc/errabort.o ucsc/hash.o ucsc/linefile.o ucsc/localmem.o ucsc/sqlNum.o ucsc/zlibFace.o ucsc/dystring.o ucsc/hmmstats.o ucsc/obscure.o ucsc/pipeline.o ucsc/rangeTree.o ucsc/rbTree.o ucsc/memalloc.o ucsc/dlist.o ucsc/udc.o ucsc/net.o ucsc/bits.o ucsc/_cheapcgi.o ucsc/internet.o ucsc/https.o ucsc/base64.o ucsc/verbose.o ucsc/os.o ucsc/wildcmp.o ucsc/_portimpl.o -LD:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/libs/i386 -lzlib1bioc -lws2_32 -LD:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.9-bioc/tmpdir/Rtmpchz1s1/Rinst6123b0/rtracklayer/libs/i386
** R
** data
** demo
** inst
** preparing package for lazy loading
Loading required package: bitops
Creating a generic function for "nrow" from package "base" in package "rtracklayer"
Creating a generic function for "offset" from package "stats" in package "rtracklayer"
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
'rtracklayer.Rnw'
** testing if installed package can be loaded
Error in loadNamespace(package, c(which.lib.loc, lib.loc), keep.source = keep.source) :
in package 'rtracklayer' classes textConnection were specified for export but not defined
Error: loading failed
Execution halted
ERROR: loading failed
* removing 'D:/biocbld/bbs-2.9-bioc/tmpdir/Rtmpchz1s1/Rinst6123b0/rtracklayer'
-----------------------------------
ERROR: package installation failed