Package: qrqc

Version: 1.1.3

Command: mkdir qrqc.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=qrqc.buildbin-libdir qrqc_1.1.3.tar.gz >qrqc-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=qrqc.buildbin-libdir --install="check:qrqc-install.out" --force-multiarch --no-vignettes --timings qrqc_1.1.3.tar.gz && mv qrqc.buildbin-libdir/* qrqc.Rcheck/ && rmdir qrqc.buildbin-libdir

StartedAt: 2011-07-07 05:59:40 -0700 (Thu, 07 Jul 2011)

EndedAt: 2011-07-07 06:02:09 -0700 (Thu, 07 Jul 2011)

EllapsedTime: 149.0 seconds

RetCode: 0

Status:  OK

CheckDir: qrqc.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/qrqc.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-20 r56188)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'qrqc/DESCRIPTION' ... OK
* this is package 'qrqc' version '1.1.3'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'qrqc' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386'
  Running 'test-functions.R'
 OK
** running tests for arch 'x64'
  Running 'test-functions.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

install for i386

* installing *source* package 'qrqc' ...
** libs
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"    -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c R_init_io.c -o R_init_io.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"    -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c io.c -o io.o
gcc -shared -s -static-libgcc -o qrqc.dll tmp.def R_init_io.o io.o -lRzlib -LD:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/qrqc.buildbin-libdir/qrqc/libs/i386
** R
** inst
** preparing package for lazy loading
Loading required package: IRanges

Attaching package: 'IRanges'

The following object(s) are masked from 'package:base':

    Map, cbind, eval, intersect, mapply, order, paste, pmax, pmax.int,
    pmin, pmin.int, rbind, rep.int, setdiff, table, union

Loading required package: GenomicRanges
Loading required package: Biostrings
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'qrqc.Rnw' 
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'qrqc' ...
** libs
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"    -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include"      -O2 -Wall  -std=gnu99 -mtune=core2 -c R_init_io.c -o R_init_io.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"    -I"D:/biocbld/bbs-2.9-bioc/R/library/Rsamtools/include"      -O2 -Wall  -std=gnu99 -mtune=core2 -c io.c -o io.o
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o qrqc.dll tmp.def R_init_io.o io.o -lRzlib -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/qrqc.buildbin-libdir/qrqc/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'qrqc' as qrqc_1.1.3.zip

* DONE (qrqc)

name	user	system	elapsed
FASTASummary-class	0	0	0
FASTQSummary-class	0	0	0
SequenceSummary-class	0	0	0
makeReport	0.83	0.05	1.69
plotBases	0.31	0.00	0.31
plotGC	0.26	0.00	0.26
plotQuals	0.44	0.00	0.44
plotSeqLengths	0.39	0.00	0.39
readSeqFile	0.26	0.00	0.26