Package: plateCore

Version: 1.11.0

Command: D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch plateCore_1.11.0.tar.gz

StartedAt: 2011-07-07 05:44:33 -0700 (Thu, 07 Jul 2011)

EndedAt: 2011-07-07 05:47:55 -0700 (Thu, 07 Jul 2011)

EllapsedTime: 202.4 seconds

RetCode: 0

Status:  OK

CheckDir: plateCore.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/plateCore.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-03 r56036)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'plateCore/DESCRIPTION' ... OK
* this is package 'plateCore' version '1.11.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'plateCore' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File type 'perl' not found or no open command associated with it.
File type 'perl' not found or no open command associated with it.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'plateCore' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)

Attaching package: 'flowCore'

The following object(s) are masked from 'package:stats':

    alias, filter

Loading required package: lattice
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
Loading required package: RColorBrewer

Attaching package: 'latticeExtra'

The following object(s) are masked from 'package:flowViz':

    ecdfplot

** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'plateCoreVig.Rnw' 
** testing if installed package can be loaded
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)

* DONE (plateCore)

name	user	system	elapsed
Subset-methods	4.41	0.00	4.41
applyControlGates-methods	14.93	0.00	14.95
compensate-methods	5.50	0.04	5.53
compensationSet	0.33	0.00	0.33
densityplot-methods	1.52	0.00	1.52
fixAutoFl-methods	5.89	0.00	5.90
flowPlate-class	3.29	0.00	3.30
flowPlate-method	3.44	0.00	3.44
fpbind-methods	8.27	0.00	8.26
getGroups-methods	1.64	0.00	1.64
gutterPlot-methods	1.39	0.00	1.40
mfiPlot-methods	15.65	0.00	15.68
on-methods	9.85	0.03	9.89
panel.densityplot.flowPlate	1.65	0.00	1.66
panel.xyplot.flowPlate	1.72	0.00	1.72
plateCore-package	3.52	0.00	3.51
plateSet-methods	3.50	0.03	3.54
plotPlate-methods	3.77	0.00	3.77
prepanel.densityplot.flowPlate	1.72	0.00	1.72
prepanel.xyplot.flowPlate	1.55	0.00	1.54
setControlGates-methods	3.89	0.00	3.89
summaryStats-methods	15.90	0.00	15.94
wellAnnotation-methods	1.49	0.00	1.48
xyplot-methods	1.61	0.00	1.63