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Package 294/479HostnameOS / ArchBUILDCHECKBUILD BIN
metaArray 1.29.0
Hyungwon Choi
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/metaArray
Last Changed Rev: 54810 / Revision: 56603
Last Changed Date: 2011-04-13 18:14:51 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: metaArray
Version: 1.29.0
Command: mkdir metaArray.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=metaArray.buildbin-libdir metaArray_1.29.0.tar.gz >metaArray-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=metaArray.buildbin-libdir --install="check:metaArray-install.out" --force-multiarch --no-vignettes --timings metaArray_1.29.0.tar.gz && mv metaArray.buildbin-libdir/* metaArray.Rcheck/ && rmdir metaArray.buildbin-libdir
StartedAt: 2011-07-07 05:37:27 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 05:38:23 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 56.0 seconds
RetCode: 0
Status:  OK  
CheckDir: metaArray.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/metaArray.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-20 r56188)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'metaArray/DESCRIPTION' ... OK
* this is package 'metaArray' version '1.29.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'metaArray' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
poe.mcmc: no visible binding for global variable 'R0'
* checking Rd files ... NOTE
prepare_Rd: em.draw.Rd:28-30: Dropping empty section \examples
prepare_Rd: find.init.Rd:20-21: Dropping empty section \examples
prepare_Rd: fit.em.Rd:31-33: Dropping empty section \examples
prepare_Rd: poe.em.Rd:22: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

metaArray.Rcheck/00install.out:


install for i386

* installing *source* package 'metaArray' ...
** libs
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -mtune=core2 -c contr.c -o contr.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -mtune=core2 -c dproc.c -o dproc.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -mtune=core2 -c dproc2.c -o dproc2.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -mtune=core2 -c intcor.c -o intcor.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -mtune=core2 -c lowess.c -o lowess.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -mtune=core2 -c mmath.c -o mmath.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -mtune=core2 -c perm.c -o perm.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -mtune=core2 -c poe.c -o poe.o
poe.c: In function 'poe_one_iter':
poe.c:431:5: warning: suggest parentheses around comparison in operand of '&'
poe.c:437:5: warning: suggest parentheses around comparison in operand of '&'
poe.c:438:5: warning: suggest parentheses around comparison in operand of '|'
gcc -shared -s -static-libgcc -o metaArray.dll tmp.def contr.o dproc.o dproc2.o intcor.o lowess.o mmath.o perm.o poe.o -lm -LD:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/metaArray.buildbin-libdir/metaArray/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Loading required package: MergeMaid
Loading required package: survival
Loading required package: splines
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: MASS
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'metaArray.Rnw' 
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'metaArray' ...
** libs
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c contr.c -o contr.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c dproc.c -o dproc.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c dproc2.c -o dproc2.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c intcor.c -o intcor.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c lowess.c -o lowess.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c mmath.c -o mmath.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c perm.c -o perm.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c poe.c -o poe.o
poe.c: In function 'poe_one_iter':
poe.c:431:5: warning: suggest parentheses around comparison in operand of '&'
poe.c:437:5: warning: suggest parentheses around comparison in operand of '&'
poe.c:438:5: warning: suggest parentheses around comparison in operand of '|'
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o metaArray.dll tmp.def contr.o dproc.o dproc2.o intcor.o lowess.o mmath.o perm.o poe.o -lm -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/metaArray.buildbin-libdir/metaArray/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'metaArray' as metaArray_1.29.0.zip

* DONE (metaArray)

metaArray.Rcheck/metaArray-Ex.timings:

nameusersystemelapsed
Zscore000
intcor000
poe.mcmc000