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Package 78/479HostnameOS / ArchBUILDCHECKBUILD BIN
cellHTS2 2.17.2
Florian Hahne
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/cellHTS2
Last Changed Rev: 56202 / Revision: 56603
Last Changed Date: 2011-06-15 06:46:06 -0700 (Wed, 15 Jun 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: cellHTS2
Version: 2.17.2
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings cellHTS2_2.17.2.tar.gz
StartedAt: 2011-07-06 23:54:27 -0700 (Wed, 06 Jul 2011)
EndedAt: 2011-07-06 23:58:21 -0700 (Wed, 06 Jul 2011)
EllapsedTime: 233.4 seconds
RetCode: 0
Status:  OK 
CheckDir: cellHTS2.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/cellHTS2.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-06-15 r56138)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘cellHTS2/DESCRIPTION’ ... OK
* this is package ‘cellHTS2’ version ‘2.17.2’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘cellHTS2’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  6.4Mb
  sub-directories of 1Mb or more:
    KcViab   2.0Mb
    data     1.2Mb
    doc      1.5Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘test.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

cellHTS2.Rcheck/00install.out:

* installing *source* package ‘cellHTS2’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: akima
Loading required package: lattice
locfit 1.5-6 	 2010-01-20 
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)
Creating a generic function for "lines" from package "graphics" in package “cellHTS2”
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘cellhts2.Rnw’ 
   ‘cellhts2Complete.Rnw’ 
   ‘twoChannels.Rnw’ 
   ‘twoWay.Rnw’ 
** testing if installed package can be loaded
locfit 1.5-6 	 2010-01-20 
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)

* DONE (cellHTS2)

cellHTS2.Rcheck/cellHTS2-Ex.timings:

nameusersystemelapsed
Bscore2.0200.0202.042
ROC-class0.3160.0080.323
ROC1.4960.0001.497
annotate0.9480.0000.952
bdgpbiomart0.4400.0000.439
buildCellHTS20.3160.0000.314
cellHTS-class0.9880.0121.002
configurationAsScreenPlot0.6760.0000.679
configure0.8760.0000.882
convertOldCellHTS1.0920.0001.116
convertWellCoordinates0.0000.0000.001
data-KcViab0.1000.0040.105
data-KcViabSmall0.0040.0000.010
data-dualCh0.0080.0040.009
data-oldKcViabSmall0.0120.0000.014
getDynamicRange0.6560.0040.683
getEnVisionRawData0.0360.0000.038
getMeasureRepAgreement0.6450.0040.648
getTopTable1.3600.0001.362
getZfactor0.4400.0000.439
imageScreen1.1400.0041.143
normalizePlates1.6760.0001.703
oneRowPerId0.0040.0000.004
plotSpatialEffects1.5720.0001.603
readHTAnalystData1.1480.0001.179
readPlateList0.8400.0000.866
rsa0.9000.0000.903
scoreReplicates1.0640.0001.070
scores2calls1.0960.0001.101
setSettings0.0080.0000.006
spatialNormalization1.3920.0081.445
summarizeChannels2.0480.0002.046
summarizeReplicates1.0210.0001.022
templateDescriptionFile0.0040.0000.002
updateCellHTS0.0200.0000.019
write.tabdel0.0200.0000.022
writeReport0.0080.0000.008
writeTab0.0160.0000.018