XDE 1.99.2
Robert Scharpf
| Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/XDE | | Last Changed Rev: 55617 / Revision: 56603 | | Last Changed Date: 2011-05-15 19:28:21 -0700 (Sun, 15 May 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | ERROR | skipped | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | ERROR | skipped | skipped |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | ERROR | skipped | skipped |
| moscato1 | Windows Server 2008 R2 Enterprise (64-bit) / x64 | ERROR | skipped | skipped |
| pitt | Mac OS X Leopard (10.5.8) / i386 | [ ERROR ] | skipped | skipped |
* checking for file 'XDE/DESCRIPTION' ... OK
* preparing 'XDE':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
-----------------------------------
* installing *source* package 'XDE' ...
** libs
** arch - i386
/usr/bin/g++ -I. -O3 -c mainTest_v2.cpp
/usr/bin/g++ -I. -O3 -c Random.cpp
/usr/bin/g++ -I. -O3 -c Cholesky.cpp
/usr/bin/g++ -I. -O3 -c Matrix.cpp
/usr/bin/g++ -I. -O3 -o ./xdeTest mainTest_v2.cpp \
Random.o Cholesky.o Matrix.o -lm
R CMD SHLIB -o Rinterface_v2.so Rinterface_v2.cpp
g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c Rinterface_v2.cpp -o Rinterface_v2.o
In file included from Update_v2.h:6,
from Rinterface_v2.cpp:3:
Random.h:19:1: warning: "PI" redefined
In file included from /Library/Frameworks/R.framework/Resources/include/R.h:38,
from Rinterface_v2.cpp:1:
/Library/Frameworks/R.framework/Resources/include/R_ext/Constants.h:30:1: warning: this is the location of the previous definition
g++-4.2 -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Rinterface_v2.so Rinterface_v2.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /private/tmp/Rtmpfw7yzq/Rinst44407ea5/XDE/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation("pkgname")'.
Creating a generic function for "pairs" from package "graphics" in package "XDE"
Creating a generic function for "lapply" from package "base" in package "XDE"
Creating a generic function for "nrow" from package "base" in package "XDE"
Creating a generic function for "plot" from package "graphics" in package "XDE"
** help
*** installing help indices
** building package indices ...
Error in library.dynam(lib, package, package.lib) :
shared object 'XDE' not found
ERROR: installing package indices failed
* removing '/private/tmp/Rtmpfw7yzq/Rinst44407ea5/XDE'
-----------------------------------
ERROR: package installation failed