Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R [S] T  U  V  W  X  Y  Z 

Package 418/479HostnameOS / ArchBUILDCHECKBUILD BIN
SamSPECTRAL 1.7.3
Habil Zare
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/SamSPECTRAL
Last Changed Rev: 56066 / Revision: 56603
Last Changed Date: 2011-06-08 15:07:12 -0700 (Wed, 08 Jun 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]

Summary

Package: SamSPECTRAL
Version: 1.7.3
Command: mkdir SamSPECTRAL.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh SamSPECTRAL_1.7.3.tar.gz /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R SamSPECTRAL.buildbin-libdir
StartedAt: 2011-07-07 06:58:15 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 06:58:20 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 4.8 seconds
RetCode: 0
Status:  OK 
PackageFile: SamSPECTRAL_1.7.3.tgz
PackageFileSize: 976 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --library=SamSPECTRAL.buildbin-libdir SamSPECTRAL_1.7.3.tar.gz'
>>>>>>> 

* installing *source* package 'SamSPECTRAL' ...
** libs
*** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c Rinit.c -o Rinit.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c conductance_computation.c -o conductance_computation.o
conductance_computation.c: In function 'conductance_computation':
conductance_computation.c:153: warning: unused variable 'dj'
conductance_computation.c:153: warning: unused variable 'di'
conductance_computation.c:152: warning: unused variable 'memberLen'
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c maximum_of_rows.c -o maximum_of_rows.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o SamSPECTRAL.so Rinit.o conductance_computation.o maximum_of_rows.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs/i386
*** arch - ppc
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c Rinit.c -o Rinit.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c conductance_computation.c -o conductance_computation.o
conductance_computation.c: In function 'conductance_computation':
conductance_computation.c:153: warning: unused variable 'dj'
conductance_computation.c:153: warning: unused variable 'di'
conductance_computation.c:152: warning: unused variable 'memberLen'
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c maximum_of_rows.c -o maximum_of_rows.o
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o SamSPECTRAL.so Rinit.o conductance_computation.o maximum_of_rows.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs/ppc
*** arch - x86_64
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c Rinit.c -o Rinit.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c conductance_computation.c -o conductance_computation.o
conductance_computation.c: In function 'conductance_computation':
conductance_computation.c:153: warning: unused variable 'dj'
conductance_computation.c:153: warning: unused variable 'di'
conductance_computation.c:152: warning: unused variable 'memberLen'
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c maximum_of_rows.c -o maximum_of_rows.o
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o SamSPECTRAL.so Rinit.o conductance_computation.o maximum_of_rows.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs/x86_64
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'Clustering_by_SamSPECTRAL.Rnw' 
** testing if installed package can be loaded

* DONE (SamSPECTRAL)


>>>>>>> 
>>>>>>> FIXING LINKS FOR SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs/i386/SamSPECTRAL.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs/i386/SamSPECTRAL.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs/i386/SamSPECTRAL.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs/i386/SamSPECTRAL.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs/i386/SamSPECTRAL.so"


>>>>>>> 
>>>>>>> FIXING LINKS FOR SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs/ppc/SamSPECTRAL.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs/ppc/SamSPECTRAL.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs/ppc/SamSPECTRAL.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs/ppc/SamSPECTRAL.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs/ppc/SamSPECTRAL.so"


>>>>>>> 
>>>>>>> FIXING LINKS FOR SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs/x86_64/SamSPECTRAL.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs/x86_64/SamSPECTRAL.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs/x86_64/SamSPECTRAL.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs/x86_64/SamSPECTRAL.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs/x86_64/SamSPECTRAL.so"