Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q [R] S  T  U  V  W  X  Y  Z 

Package 399/479HostnameOS / ArchBUILDCHECKBUILD BIN
RNAinteract 1.1.1
Bernd Fischer
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/RNAinteract
Last Changed Rev: 56169 / Revision: 56603
Last Changed Date: 2011-06-14 08:39:43 -0700 (Tue, 14 Jun 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: RNAinteract
Version: 1.1.1
Command: E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch RNAinteract_1.1.1.tar.gz
StartedAt: 2011-07-07 03:26:21 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 03:29:02 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 161.0 seconds
RetCode: 0
Status:  OK  
CheckDir: RNAinteract.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.9-bioc/meat/RNAinteract.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-03 r56036)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RNAinteract/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RNAinteract' version '1.1.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RNAinteract' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

RNAinteract.Rcheck/00install.out:

* installing *source* package 'RNAinteract' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: akima
Loading required package: lattice
locfit 1.5-6 	 2010-01-20 

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading Tcl/Tk interface ... done
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'RNAinteract.Rnw' 
** testing if installed package can be loaded
locfit 1.5-6 	 2010-01-20 
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)

* DONE (RNAinteract)

RNAinteract.Rcheck/RNAinteract-Ex.timings:

nameusersystemelapsed
RNAinteract-class000
bindsamples0.580.000.58
computePI0.040.000.05
computePValues0.250.000.25
embedPCA0.040.000.03
estimateMainEffect1.870.001.94
getData0.230.000.23
getMain0.020.010.03
getReplicateData0.020.000.02
getSampleNames000
getScale0.010.000.01
grid.sgiHeatmap0.130.000.13
normalizeMainEffectQuery0.120.000.12
normalizeMainEffectTemplate0.420.000.43
normalizePlateEffect2.380.002.40
plotDoublePerturbation0.090.000.10
plotHeatmap0.110.000.11
reportAnnotation0.050.000.04
sgi000
sgisubset0.050.000.04
startReport0.030.020.05
summarizeSamples0.280.000.28