Package: RCASPAR

Version: 0.99.2

Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch RCASPAR_0.99.2.tar.gz

StartedAt: 2011-07-07 05:15:46 -0700 (Thu, 07 Jul 2011)

EndedAt: 2011-07-07 05:16:17 -0700 (Thu, 07 Jul 2011)

EllapsedTime: 30.9 seconds

RetCode: 0

Status:  OK

CheckDir: RCASPAR.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.9-bioc/meat/RCASPAR.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-22 r56208)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'RCASPAR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RCASPAR' version '0.99.2'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RCASPAR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'RCASPAR' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'RCASPAR.Rnw' 
** testing if installed package can be loaded

* DONE (RCASPAR)

name	user	system	elapsed
Bergamaschi	0.026	0.003	0.030
RCASPAR-package	1.230	0.024	1.290
STpredictor_BLH	0.181	0.006	0.208
STpredictor_xvBLH	1.692	0.019	1.731
deriv_weight_estimator_BLH	0.006	0.001	0.008
deriv_weight_estimator_BLH_noprior	0.006	0.001	0.007
kmplt	0.005	0.001	0.006
kmplt_svrl	0.016	0.000	0.016
logrnk	0.007	0.001	0.006
pltgamma	0.002	0.000	0.002
pltprior	0.002	0.001	0.002
simpson	0	0	0
survData	0.003	0.001	0.003
survivAURC	0.374	0.003	0.390
survivROC	0.105	0.002	0.108
trapezoid	0.001	0.001	0.001
weight_estimator_BLH	0	0	0
weight_estimator_BLH_noprior	0.007	0.001	0.008
weights_BLH	0.014	0.001	0.016
weights_xvBLH	0.127	0.003	0.130