Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q [R] S  T  U  V  W  X  Y  Z 

Package 371/479HostnameOS / ArchBUILDCHECKBUILD BIN
R453Plus1Toolbox 1.3.1
Hans-Ulrich Klein
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/R453Plus1Toolbox
Last Changed Rev: 56470 / Revision: 56603
Last Changed Date: 2011-06-30 08:14:07 -0700 (Thu, 30 Jun 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK [ OK ]
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: R453Plus1Toolbox
Version: 1.3.1
Command: mkdir R453Plus1Toolbox.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=R453Plus1Toolbox.buildbin-libdir R453Plus1Toolbox_1.3.1.tar.gz
StartedAt: 2011-07-07 07:10:28 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 07:12:27 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 119.2 seconds
RetCode: 0
Status:  OK  
PackageFile: R453Plus1Toolbox_1.3.1.zip
PackageFileSize: 1.241 MiB

Command output


install for i386

* installing *source* package 'R453Plus1Toolbox' ...
** libs
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c readSFF.c -o readSFF.o
gcc -shared -s -static-libgcc -o R453Plus1Toolbox.dll tmp.def readSFF.o -LD:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/R453Plus1Toolbox.buildbin-libdir/R453Plus1Toolbox/libs/i386
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: IRanges

Attaching package: 'IRanges'

The following object(s) are masked from 'package:Biobase':

    updateObject

The following object(s) are masked from 'package:base':

    Map, cbind, eval, intersect, mapply, order, paste, pmax, pmax.int,
    pmin, pmin.int, rbind, rep.int, setdiff, table, union

Loading required package: BSgenome
Loading required package: GenomicRanges
Creating a new generic function for "name" in package "R453Plus1Toolbox"
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'vignette.Rnw' 
** testing if installed package can be loaded
Warning message:
multiple methods tables found for 'name' 

add DLL for x64

* installing *source* package 'R453Plus1Toolbox' ...
Warning in file.copy(instdir, lockdir, recursive = TRUE) :
  problem copying D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\1.CAT.454Reads.fna to D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\00LOCK-R453Plus1Toolbox\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\1.CAT.454Reads.fna: No such file or directory
Warning in file.copy(instdir, lockdir, recursive = TRUE) :
  problem copying D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\1.CAT.454Reads.qual to D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\00LOCK-R453Plus1Toolbox\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\1.CAT.454Reads.qual: No such file or directory
Warning in file.copy(instdir, lockdir, recursive = TRUE) :
  problem copying D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\1.TCA.454Reads.fna to D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\00LOCK-R453Plus1Toolbox\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\1.TCA.454Reads.fna: No such file or directory
Warning in file.copy(instdir, lockdir, recursive = TRUE) :
  problem copying D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\1.TCA.454Reads.qual to D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\00LOCK-R453Plus1Toolbox\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\1.TCA.454Reads.qual: No such file or directory
Warning in file.copy(instdir, lockdir, recursive = TRUE) :
  problem copying D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\2.CAT.454Reads.fna to D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\00LOCK-R453Plus1Toolbox\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\2.CAT.454Reads.fna: No such file or directory
Warning in file.copy(instdir, lockdir, recursive = TRUE) :
  problem copying D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\2.CAT.454Reads.qual to D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\00LOCK-R453Plus1Toolbox\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\2.CAT.454Reads.qual: No such file or directory
Warning in file.copy(instdir, lockdir, recursive = TRUE) :
  problem copying D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\2.TCA.454Reads.fna to D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\00LOCK-R453Plus1Toolbox\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\2.TCA.454Reads.fna: No such file or directory
Warning in file.copy(instdir, lockdir, recursive = TRUE) :
  problem copying D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\2.TCA.454Reads.qual to D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\00LOCK-R453Plus1Toolbox\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\2.TCA.454Reads.qual: No such file or directory
Warning in file.copy(instdir, lockdir, recursive = TRUE) :
  problem copying D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\454BaseCallerMetrics.csv to D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\00LOCK-R453Plus1Toolbox\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\454BaseCallerMetrics.csv: No such file or directory
Warning in file.copy(instdir, lockdir, recursive = TRUE) :
  problem copying D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\454BaseCallerMetrics.txt to D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\00LOCK-R453Plus1Toolbox\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\454BaseCallerMetrics.txt: No such file or directory
Warning in file.copy(instdir, lockdir, recursive = TRUE) :
  problem copying D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\454DataProcessingDir.xml to D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\00LOCK-R453Plus1Toolbox\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\454DataProcessingDir.xml: No such file or directory
Warning in file.copy(instdir, lockdir, recursive = TRUE) :
  problem copying D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\454QualityFilterMetrics.csv to D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\00LOCK-R453Plus1Toolbox\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\454QualityFilterMetrics.csv: No such file or directory
Warning in file.copy(instdir, lockdir, recursive = TRUE) :
  problem copying D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\454QualityFilterMetrics.txt to D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\00LOCK-R453Plus1Toolbox\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\454QualityFilterMetrics.txt: No such file or directory
Warning in file.copy(instdir, lockdir, recursive = TRUE) :
  problem copying D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\454RuntimeMetricsAll.csv to D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\00LOCK-R453Plus1Toolbox\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\454RuntimeMetricsAll.csv: No such file or directory
Warning in file.copy(instdir, lockdir, recursive = TRUE) :
  problem copying D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\454RuntimeMetricsAll.txt to D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\00LOCK-R453Plus1Toolbox\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\454RuntimeMetricsAll.txt: No such file or directory
Warning in file.copy(instdir, lockdir, recursive = TRUE) :
  problem copying D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\dataRunParams.xml to D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\00LOCK-R453Plus1Toolbox\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\dataRunParams.xml: No such file or directory
Warning in file.copy(instdir, lockdir, recursive = TRUE) :
  problem copying D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\gsRunProcessor.log to D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\00LOCK-R453Plus1Toolbox\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\gsRunProcessor.log: No such file or directory
** libs
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -std=gnu99 -mtune=core2 -c readSFF.c -o readSFF.o
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o R453Plus1Toolbox.dll tmp.def readSFF.o -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/R453Plus1Toolbox.buildbin-libdir/R453Plus1Toolbox/libs/x64
** testing if installed package can be loaded
Warning message:
multiple methods tables found for 'name' 
* MD5 sums
packaged installation of 'R453Plus1Toolbox' as R453Plus1Toolbox_1.3.1.zip

* DONE (R453Plus1Toolbox)