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Package 437/462HostnameOS / ArchBUILDCHECKBUILD BIN
survcomp 1.3.0
Benjamin Haibe-Kains , Markus Schroeder
Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/survcomp
Last Changed Rev: 54802 / Revision: 55359
Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: survcomp
Version: 1.3.0
Command: E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings survcomp_1.3.0.tar.gz
StartedAt: 2011-05-09 15:54:47 -0700 (Mon, 09 May 2011)
EndedAt: 2011-05-09 15:55:32 -0700 (Mon, 09 May 2011)
EllapsedTime: 45.5 seconds
RetCode: 0
Status:  OK  
CheckDir: survcomp.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.9-bioc/meat/survcomp.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-04-17 r55484)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'survcomp/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'survcomp' version '1.3.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'survcomp' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... NOTE
'library' or 'require' call not declared from: 'xtable'
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

survcomp.Rcheck/00install.out:

* installing *source* package 'survcomp' ...
** libs
gcc  -I"E:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -c concordance.index.c -o concordance.index.o
gcc -shared -s -static-libgcc -o survcomp.dll tmp.def concordance.index.o -LE:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.9-bioc/meat/survcomp.Rcheck/survcomp/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Loading required package: splines
Loading required package: rpart
Loading required package: MASS
Loading required package: mlbench
Loading required package: nnet
Loading required package: class
Loading required package: KernSmooth
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009

Attaching package: 'bootstrap'

The following object(s) are masked from 'package:prodlim':

    jackknife

** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'survcomp.Rnw' 
** testing if installed package can be loaded

* DONE (survcomp)

survcomp.Rcheck/survcomp-Ex.timings:

nameusersystemelapsed
D.index0.030.000.06
breastCancerData0.970.000.97
censor.time000
cindex.comp000
cindex.comp.meta000
combine.est000
combine.test000
concordance.index0.000.010.02
cvpl0.30.00.3
dindex.comp0.020.000.01
dindex.comp.meta0.030.000.03
fisherz000
forestplot.surv000
getsurv20.010.000.02
hazard.ratio0.020.000.01
hr.comp0.010.000.02
hr.comp.meta0.040.000.03
hr.comp20.010.000.02
iauc.comp0.580.000.58
ibsc.comp0.360.000.35
km.coxph.plot0.050.000.05
logpl0.030.000.03
mainz7g0.180.020.21
nki7g0.190.020.25
no.at.risk0.030.000.03
sbrier.score2proba0.370.000.38
score2proba0.020.000.02
td.sens.spec000
tdrocc0.310.000.31
test.hetero.est000
test.hetero.test000
transbig7g0.20.00.2
unt7g0.240.000.24
upp7g0.210.000.22
vdx7g0.220.000.23