Package: maSigPro

Version: 1.25.1

Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings maSigPro_1.25.1.tar.gz

StartedAt: 2011-05-09 13:09:00 -0700 (Mon, 09 May 2011)

EndedAt: 2011-05-09 13:10:46 -0700 (Mon, 09 May 2011)

EllapsedTime: 105.5 seconds

RetCode: 0

Status:  OK

CheckDir: maSigPro.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/maSigPro.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-04-18 r55504)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘maSigPro/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘maSigPro’ version ‘1.25.1’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘maSigPro’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘maSigPro’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading Tcl/Tk interface ... done
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘maSigPro-tutorial.Rnw’ 
** testing if installed package can be loaded

* DONE (maSigPro)

name	user	system	elapsed
PlotGroups	0.02	0.00	0.02
PlotProfiles	0.012	0.000	0.010
T.fit	12.800	0.124	12.957
average.rows	0.008	0.000	0.008
data.abiotic	0.032	0.000	0.031
edesign.OD	0.004	0.000	0.003
edesign.abiotic	0.004	0.000	0.005
edesignCT	0.000	0.000	0.003
edesignDR	0.000	0.000	0.002
get.siggenes	4.981	0.096	5.086
i.rank	0.004	0.000	0.001
maSigPro	8.000	0.080	8.087
make.design.matrix	0.016	0.000	0.014
p.vector	2.760	0.028	2.795
position	0	0	0
reg.coeffs	0.004	0.000	0.000
see.genes	11.017	0.468	13.158
stepback	0.052	0.000	0.054
stepfor	0.240	0.004	0.244
suma2Venn	0.204	0.032	0.291
two.ways.stepback	0.200	0.000	0.208
two.ways.stepfor	0.268	0.000	0.274