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Package 440/462HostnameOS / ArchBUILDCHECKBUILD BIN
TEQC 1.1.1
Manuela Hummel
Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/TEQC
Last Changed Rev: 55208 / Revision: 55359
Last Changed Date: 2011-05-03 03:06:05 -0700 (Tue, 03 May 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: TEQC
Version: 1.1.1
Command: E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings TEQC_1.1.1.tar.gz
StartedAt: 2011-05-09 15:55:34 -0700 (Mon, 09 May 2011)
EndedAt: 2011-05-09 15:57:19 -0700 (Mon, 09 May 2011)
EllapsedTime: 104.2 seconds
RetCode: 0
Status:  OK  
CheckDir: TEQC.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.9-bioc/meat/TEQC.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-04-17 r55484)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'TEQC/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'TEQC' version '1.1.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'TEQC' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

TEQC.Rcheck/00install.out:

* installing *source* package 'TEQC' ...
** R
** inst
** preparing package for lazy loading

Attaching package: 'IRanges'

The following object(s) are masked from 'package:base':

    Map, cbind, eval, intersect, mapply, order, paste, pmax, pmax.int,
    pmin, pmin.int, rbind, rep.int, setdiff, table, union

** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'TEQC.Rnw' 
** testing if installed package can be loaded

* DONE (TEQC)

TEQC.Rcheck/TEQC-Ex.timings:

nameusersystemelapsed
chrom.barplot0.460.000.45
coverage.GC1.570.001.62
coverage.correlation2.410.002.44
coverage.density1.250.001.25
coverage.hist1.330.011.35
coverage.plot1.20.01.2
coverage.target1.330.021.39
coverage.targetlength.plot1.500.001.51
coverage.uniformity1.230.001.24
covered.k1.220.001.22
duplicates.barplot6.490.006.48
fraction.reads.target0.540.000.55
fraction.target0.140.000.14
get.baits0.040.000.03
get.reads0.170.000.17
get.targets0.150.000.16
insert.size.hist2.460.002.47
make.wigfiles1.430.001.45
reads2pairs2.360.002.36
readsPerTarget0.740.000.77