Package: SSPA

Version: 1.9.0

Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch SSPA_1.9.0.tar.gz

StartedAt: 2011-05-09 17:20:51 -0700 (Mon, 09 May 2011)

EndedAt: 2011-05-09 17:22:15 -0700 (Mon, 09 May 2011)

EllapsedTime: 84.9 seconds

RetCode: 0

Status:  OK

CheckDir: SSPA.Rcheck

Warnings: 0

* using log directory ‘/Users/biocbuild/bbs-2.9-bioc/meat/SSPA.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-04-24 r55634)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SSPA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘SSPA’ version ‘1.9.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘SSPA’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... NOTE
  ‘qpdf’ made some significant size reductions:
     compacted ‘SSPA.pdf’ from 2439Kb to 390Kb
  consider running tools::compactPDF() on these files
* checking examples ... OK
* checking for unstated dependencies in vignettes ... NOTE
‘library’ or ‘require’ calls not declared from:
  ‘convert’ ‘marray’
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘SSPA’ ...
** R
** inst
** preparing package for lazy loading
Loading Tcl/Tk interface ... done
Creating a new generic function for "hist" in "SSPA"
Creating a new generic function for "plot" in "SSPA"
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘SSPA.Rnw’ using ‘latin-9’ 
** testing if installed package can be loaded

* DONE (SSPA)

name	user	system	elapsed
Power	11.008	4.635	15.881
hist	0.163	0.022	0.193
pilotData	0.155	0.017	0.172
plot	0.213	0.028	0.243
plotEffectSize	3.444	3.692	7.325
sampleSize	3.507	3.685	7.302