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Package 314/462HostnameOS / ArchBUILDCHECKBUILD BIN
OLIN 1.31.0
Matthias Futschik
Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/OLIN
Last Changed Rev: 54810 / Revision: 55359
Last Changed Date: 2011-04-13 18:14:51 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: OLIN
Version: 1.31.0
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch OLIN_1.31.0.tar.gz
StartedAt: 2011-05-09 16:01:00 -0700 (Mon, 09 May 2011)
EndedAt: 2011-05-09 16:03:23 -0700 (Mon, 09 May 2011)
EllapsedTime: 143.6 seconds
RetCode: 0
Status:  OK 
CheckDir: OLIN.Rcheck
Warnings: 0

Command output

* using log directory ‘/Users/biocbuild/bbs-2.9-bioc/meat/OLIN.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-04-24 r55634)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘OLIN/DESCRIPTION’ ... OK
* this is package ‘OLIN’ version ‘1.31.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘OLIN’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  6.5Mb
  sub-directories of 1Mb or more:
    doc   5.6Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... NOTE
  ‘qpdf’ made some significant size reductions:
     compacted ‘OLIN.pdf’ from 5641Kb to 762Kb
  consider running tools::compactPDF() on these files
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

OLIN.Rcheck/00install.out:

* installing *source* package ‘OLIN’ ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: akima
Loading required package: lattice
locfit 1.5-6 	 2010-01-20 
Loading required package: limma
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘OLIN.Rnw’ 
** testing if installed package can be loaded
locfit 1.5-6 	 2010-01-20 

* DONE (OLIN)

OLIN.Rcheck/OLIN-Ex.timings:

nameusersystemelapsed
anovaint0.3070.0550.363
anovapin0.2770.0460.330
anovaplate0.2420.0460.289
anovaspatial0.6540.1140.778
backgroundCorrect21.1390.1761.318
bas0.0820.0130.095
colorbar.mxy0.1010.0190.121
fdr.int000
fdr.int2000
fdr.spatial000
fdr.spatial20.0010.0010.000
fgbg.visu0.2420.0360.279
ino0.4890.1470.663
lin1.8160.3592.187
m2v0.1140.0210.134
ma.matrix0.6600.0310.831
ma.vector0.8400.0470.890
mxy.abs.plot0.1530.0260.180
mxy.plot0.1510.0380.190
mxy2.plot0.1270.0240.155
oin2.3680.4112.797
olin50.637 5.25556.813
p.int0.0010.0000.000
p.int20.0000.0010.000
p.spatial000
p.spatial20.0010.0010.001
sig.mask0.0000.0000.001
sigint.plot0.0000.0010.001
sigint.plot20.0000.0000.001
sigxy.plot0.0000.0010.001
sigxy.plot20.0000.0000.001
v2m0.0770.0090.086