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Package 287/467HostnameOS / ArchBUILDCHECKBUILD BIN
methylumi 1.8.0
Sean Davis
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/methylumi
Last Changed Rev: 56142 / Revision: 59457
Last Changed Date: 2011-06-13 11:59:45 -0700 (Mon, 13 Jun 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: methylumi
Version: 1.8.0
Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings methylumi_1.8.0.tar.gz
StartedAt: 2011-10-20 13:33:57 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 13:35:00 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 63.0 seconds
RetCode: 0
Status:  OK 
CheckDir: methylumi.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/methylumi.Rcheck’
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘methylumi/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘methylumi’ version ‘1.8.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘methylumi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: estimateM.Rd:34-36: Dropping empty section \seealso
prepare_Rd: estimateM.Rd:37-39: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

methylumi.Rcheck/00install.out:

* installing *source* package ‘methylumi’ ...
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for "summary" in "methylumi"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (methylumi)

methylumi.Rcheck/methylumi-Ex.timings:

nameusersystemelapsed
MethyLumi-class0.9200.0160.942
MethyLumiM-class0.0000.0000.001
MethyLumiQC-class0.0000.0000.001
MethyLumiSet-class0.0000.0000.001
extractBarcodeAndPosition0.0040.0000.004
featureFilter1.4240.0441.517
getAssayDataNameSubstitutions0.0040.0000.014
methylumiR0.8840.0280.947
mldat0.0400.0000.043
normalizeMethyLumiSet1.0440.0041.087
plotSampleIntensities0.0760.0000.079
qcplot0.4600.0000.463
varFilter0.6880.0040.734