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Package 174/467HostnameOS / ArchBUILDCHECKBUILD BIN
geneplotter 1.30.0
Biocore Team c/o BioC user list
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/geneplotter
Last Changed Rev: 54800 / Revision: 59457
Last Changed Date: 2011-04-13 15:27:35 -0700 (Wed, 13 Apr 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ WARNINGS ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: geneplotter
Version: 1.30.0
Command: D:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch geneplotter_1.30.0.tar.gz
StartedAt: 2011-10-20 14:28:07 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 14:29:18 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 71.1 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: geneplotter.Rcheck
Warnings: 1

Command output

* using log directory 'D:/biocbld/bbs-2.8-bioc/meat/geneplotter.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'geneplotter/DESCRIPTION' ... OK
* this is package 'geneplotter' version '1.30.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'geneplotter' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... WARNING
Package vignette(s) without corresponding PDF:
   byChroms.Rnw
   visualize.Rnw

* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  'D:/biocbld/bbs-2.8-bioc/meat/geneplotter.Rcheck/00check.log'
for details

geneplotter.Rcheck/00install.out:

* installing *source* package 'geneplotter' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (geneplotter)

geneplotter.Rcheck/geneplotter-Ex.timings:

nameusersystemelapsed
GetColor000
Makesense3.460.054.67
alongChrom1.920.031.95
amplicon.plot000
cColor1.500.021.51
cPlot1.460.001.46
cScale1.450.001.45
eset133a0.060.000.06
groupedHeatmap0.80.00.8
histStack0.030.000.03
imageMap0.060.000.06
make.chromOrd0.210.000.30
multiecdf0.060.000.06
openHtmlPage000
plotChr2.840.002.85
plotExpressionGraph1.550.011.78
savepng0.160.000.85