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Package 142/467HostnameOS / ArchBUILDCHECKBUILD BIN
fabia 1.4.0
Sepp Hochreiter
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/fabia
Last Changed Rev: 54808 / Revision: 59457
Last Changed Date: 2011-04-13 18:03:42 -0700 (Wed, 13 Apr 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: fabia
Version: 1.4.0
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch fabia_1.4.0.tar.gz
StartedAt: 2011-10-20 14:41:07 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 14:42:18 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 71.0 seconds
RetCode: 0
Status:  OK 
CheckDir: fabia.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/fabia.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'fabia/DESCRIPTION' ... OK
* this is package 'fabia' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'fabia' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking sizes of PDF files under inst/doc ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

fabia.Rcheck/00install.out:

* installing *source* package 'fabia' ...
checking for C++ compiler default output... a.out
checking whether the C++ compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++-4.2 -arch i386 accepts -g... yes
rm: conftest.dSYM: is a directory
checking how to run the C++ preprocessor... g++-4.2 -arch i386 -E
Building libRcpp.a in RcppSrc...
rm -f Rcpp.o libRcpp.a
g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c Rcpp.cpp -o Rcpp.o
ar crs libRcpp.a Rcpp.o
rm -f Rcpp.o
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - i386
g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include   -I../RcppSrc -fPIC  -g -O2 -Wall -fasm-blocks -c fabiac.cpp -o fabiac.o
g++-4.2 -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o fabia.so fabiac.o -L../RcppSrc -lRcpp -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/fabia.Rcheck/fabia/libs/i386
** R
** demo
** inst
** preparing package for lazy loading
Creating a new generic function for "plot" in "fabia"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (fabia)

fabia.Rcheck/fabia-Ex.timings:

nameusersystemelapsed
estimateMode0.0650.0090.074
extractBic0.1870.0070.201
extractPlot0.3710.0220.395
fabi0.6530.0250.690
fabia0.2000.0060.208
fabiaDemo0.0000.0000.001
fabiaVersion0.0020.0000.002
fabiap0.1990.0070.208
fabias0.1950.0070.206
fabiasp1.3790.0531.440
makeFabiaData0.0580.0110.103
makeFabiaDataBlocks0.0360.0080.060
makeFabiaDataBlocksPos0.0310.0070.056
makeFabiaDataPos0.0340.0070.059
matrixImagePlot0.0310.0060.050
mfsc0.2160.0170.236
nmfdiv0.1870.1000.288
nmfeu0.1410.0700.216
nmfsc0.0650.0110.084
plot-methods1.3050.0281.400
plotBicluster0.2040.0090.224
projFunc0.0010.0010.002
projFuncPos0.0010.0010.001
show-methods0.2410.0090.288
showSelected-methods0.2120.0060.222
summary-methods0.2240.0060.231