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Package 141/467HostnameOS / ArchBUILDCHECKBUILD BIN
externalVector 1.18.0
Biocore Team c/o BioC user list
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/externalVector
Last Changed Rev: 54800 / Revision: 59457
Last Changed Date: 2011-04-13 15:27:35 -0700 (Wed, 13 Apr 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]

Summary

Package: externalVector
Version: 1.18.0
Command: rm -rf externalVector.buildbin-libdir && mkdir externalVector.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh externalVector_1.18.0.tar.gz /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R externalVector.buildbin-libdir
StartedAt: 2011-10-20 18:10:30 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 18:11:07 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 37.6 seconds
RetCode: 0
Status:  OK 
PackageFile: externalVector_1.18.0.tgz
PackageFileSize: 537.7 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --library=externalVector.buildbin-libdir externalVector_1.18.0.tar.gz'
>>>>>>> 

* installing *source* package 'externalVector' ...
** libs
*** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c allocator.c -o allocator.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c arraySummary.c -o arraySummary.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c coerce.c -o coerce.o
coerce.c: In function 'ComplexFromString':
coerce.c:213: warning: initialization from incompatible pointer type
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c externalVector.c -o externalVector.o
externalVector.c:7: warning: 'ScalarVector' defined but not used
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c groups.c -o groups.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c math.c -o math.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c slice.c -o slice.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c storage.c -o storage.o
storage.c: In function 'createNativeStorageMethods':
storage.c:2627: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2633: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2639: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2643: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2648: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2652: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2657: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2662: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2672: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2677: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2681: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2685: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2690: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2695: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2705: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2709: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2713: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2717: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2722: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2727: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2737: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2741: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2745: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2749: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2753: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2757: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2769: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2775: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2781: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2787: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2793: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2799: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2811: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2817: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2823: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2829: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2835: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2841: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2853: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2859: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2865: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2871: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2877: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2883: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2894: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2899: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2904: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2909: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2914: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2919: warning: ISO C forbids conversion of object pointer to function pointer type
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c subscript.c -o subscript.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o externalVector.so allocator.o arraySummary.o coerce.o externalVector.o groups.o math.o slice.o storage.o subscript.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/externalVector.buildbin-libdir/externalVector/libs/i386
*** arch - ppc
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c allocator.c -o allocator.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c arraySummary.c -o arraySummary.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c coerce.c -o coerce.o
coerce.c: In function 'ComplexFromString':
coerce.c:213: warning: initialization from incompatible pointer type
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c externalVector.c -o externalVector.o
externalVector.c:7: warning: 'ScalarVector' defined but not used
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c groups.c -o groups.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c math.c -o math.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c slice.c -o slice.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c storage.c -o storage.o
storage.c: In function 'createNativeStorageMethods':
storage.c:2627: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2633: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2639: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2643: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2648: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2652: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2657: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2662: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2672: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2677: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2681: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2685: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2690: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2695: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2705: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2709: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2713: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2717: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2722: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2727: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2737: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2741: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2745: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2749: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2753: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2757: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2769: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2775: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2781: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2787: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2793: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2799: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2811: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2817: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2823: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2829: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2835: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2841: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2853: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2859: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2865: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2871: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2877: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2883: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2894: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2899: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2904: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2909: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2914: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2919: warning: ISO C forbids conversion of object pointer to function pointer type
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c subscript.c -o subscript.o
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o externalVector.so allocator.o arraySummary.o coerce.o externalVector.o groups.o math.o slice.o storage.o subscript.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/externalVector.buildbin-libdir/externalVector/libs/ppc
*** arch - x86_64
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c allocator.c -o allocator.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c arraySummary.c -o arraySummary.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c coerce.c -o coerce.o
coerce.c: In function 'ComplexFromString':
coerce.c:213: warning: initialization from incompatible pointer type
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c externalVector.c -o externalVector.o
externalVector.c:7: warning: 'ScalarVector' defined but not used
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c groups.c -o groups.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c math.c -o math.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c slice.c -o slice.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c storage.c -o storage.o
storage.c: In function 'createNativeStorageMethods':
storage.c:2627: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2633: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2639: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2643: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2648: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2652: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2657: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2662: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2672: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2677: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2681: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2685: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2690: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2695: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2705: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2709: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2713: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2717: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2722: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2727: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2737: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2741: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2745: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2749: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2753: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2757: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2769: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2775: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2781: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2787: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2793: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2799: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2811: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2817: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2823: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2829: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2835: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2841: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2853: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2859: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2865: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2871: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2877: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2883: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2894: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2899: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2904: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2909: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2914: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2919: warning: ISO C forbids conversion of object pointer to function pointer type
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c subscript.c -o subscript.o
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o externalVector.so allocator.o arraySummary.o coerce.o externalVector.o groups.o math.o slice.o storage.o subscript.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/externalVector.buildbin-libdir/externalVector/libs/x86_64
** R
** preparing package for lazy loading
Creating a new generic function for "match" in "externalVector"
Creating a new generic function for "as.vector" in "externalVector"
Creating a new generic function for "as.single" in "externalVector"
Creating a new generic function for "as.list" in "externalVector"
Creating a new generic function for "as.matrix" in "externalVector"
Creating a new generic function for "as.data.frame" in "externalVector"
Creating a new generic function for "colSums" in "externalVector"
Creating a new generic function for "colMeans" in "externalVector"
Creating a new generic function for "rowSums" in "externalVector"
Creating a new generic function for "rowMeans" in "externalVector"
Creating a new generic function for "apply" in "externalVector"
Creating a new generic function for "lapply" in "externalVector"
Creating a new generic function for "sapply" in "externalVector"
Creating a new generic function for "mean" in "externalVector"
Creating a new generic function for "median" in "externalVector"
Creating a generic for 'var' in package 'externalVector'
    (the supplied definition differs from and overrides the implicit generic
    in package 'stats': Formal arguments differ (in default values?))
Creating a generic for 'cov' in package 'externalVector'
    (the supplied definition differs from and overrides the implicit generic
    in package 'stats': Formal arguments differ (in default values?))
Creating a generic for 'cor' in package 'externalVector'
    (the supplied definition differs from and overrides the implicit generic
    in package 'stats': Formal arguments differ (in default values?))
Creating a new generic function for "cov2cor" in "externalVector"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (externalVector)


>>>>>>> 
>>>>>>> FIXING LINKS FOR externalVector.buildbin-libdir/externalVector/libs/i386/externalVector.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgcc_s.1.dylib" "externalVector.buildbin-libdir/externalVector/libs/i386/externalVector.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib" "externalVector.buildbin-libdir/externalVector/libs/i386/externalVector.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.5.2.dylib" "externalVector.buildbin-libdir/externalVector/libs/i386/externalVector.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.dylib" "externalVector.buildbin-libdir/externalVector/libs/i386/externalVector.so"


>>>>>>> 
>>>>>>> FIXING LINKS FOR externalVector.buildbin-libdir/externalVector/libs/ppc/externalVector.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgcc_s.1.dylib" "externalVector.buildbin-libdir/externalVector/libs/ppc/externalVector.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib" "externalVector.buildbin-libdir/externalVector/libs/ppc/externalVector.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.5.2.dylib" "externalVector.buildbin-libdir/externalVector/libs/ppc/externalVector.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.dylib" "externalVector.buildbin-libdir/externalVector/libs/ppc/externalVector.so"


>>>>>>> 
>>>>>>> FIXING LINKS FOR externalVector.buildbin-libdir/externalVector/libs/x86_64/externalVector.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgcc_s.1.dylib" "externalVector.buildbin-libdir/externalVector/libs/x86_64/externalVector.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib" "externalVector.buildbin-libdir/externalVector/libs/x86_64/externalVector.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.5.2.dylib" "externalVector.buildbin-libdir/externalVector/libs/x86_64/externalVector.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.dylib" "externalVector.buildbin-libdir/externalVector/libs/x86_64/externalVector.so"