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Package 77/467HostnameOS / ArchBUILDCHECKBUILD BIN
cellHTS2 2.16.0
Florian Hahne
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/cellHTS2
Last Changed Rev: 54800 / Revision: 59457
Last Changed Date: 2011-04-13 15:27:35 -0700 (Wed, 13 Apr 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: cellHTS2
Version: 2.16.0
Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings cellHTS2_2.16.0.tar.gz
StartedAt: 2011-10-20 12:05:44 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 12:09:40 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 235.6 seconds
RetCode: 0
Status:  OK 
CheckDir: cellHTS2.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/cellHTS2.Rcheck’
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘cellHTS2/DESCRIPTION’ ... OK
* this is package ‘cellHTS2’ version ‘2.16.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘cellHTS2’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  6.9Mb
  sub-directories of 1Mb or more:
    KcViab   2.0Mb
    doc      2.0Mb
    data     1.2Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘test.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

cellHTS2.Rcheck/00install.out:

* installing *source* package ‘cellHTS2’ ...
** R
** data
** inst
** preparing package for lazy loading
locfit 1.5-6 	 2010-01-20 
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)
Creating a new generic function for "lines" in "cellHTS2"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
locfit 1.5-6 	 2010-01-20 
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)

* DONE (cellHTS2)

cellHTS2.Rcheck/cellHTS2-Ex.timings:

nameusersystemelapsed
Bscore2.1640.0082.174
ROC-class0.2920.0080.302
ROC1.2680.0041.284
annotate0.9880.0000.988
bdgpbiomart0.4080.0000.419
buildCellHTS20.2840.0040.287
cellHTS-class0.9600.0201.339
configurationAsScreenPlot1.140.001.14
configure0.7240.0040.727
convertOldCellHTS1.1400.0001.143
convertWellCoordinates0.0000.0000.001
data-KcViab0.1040.0040.107
data-KcViabSmall0.0080.0000.009
data-dualCh0.0120.0000.010
data-oldKcViabSmall0.0080.0000.008
getDynamicRange0.7730.0000.772
getEnVisionRawData0.0360.0000.036
getMeasureRepAgreement0.5560.0040.560
getTopTable1.2200.0081.230
getZfactor0.4120.0000.418
imageScreen1.0520.0001.053
normalizePlates1.5600.0001.561
oneRowPerId0.0040.0000.003
plotSpatialEffects1.3360.0041.345
readHTAnalystData1.1640.0041.189
readPlateList0.8280.0080.836
scoreReplicates1.0680.0001.111
scores2calls1.1120.0001.133
setSettings0.0080.0000.006
spatialNormalization1.4880.0001.495
summarizeChannels2.1480.0042.151
summarizeReplicates0.9600.0040.973
templateDescriptionFile0.0000.0000.001
updateCellHTS0.0160.0040.019
write.tabdel0.0160.0040.020
writeReport0.0080.0000.008
writeTab0.0160.0000.016