VanillaICE 1.14.0
Robert Scharpf
| Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/VanillaICE | | Last Changed Rev: 54808 / Revision: 59457 | | Last Changed Date: 2011-04-13 18:03:42 -0700 (Wed, 13 Apr 2011) |
| lamb1 | Linux (openSUSE 11.3) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| gewurz | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | WARNINGS | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --library=VanillaICE.buildbin-libdir VanillaICE_1.14.0.tar.gz'
>>>>>>>
* installing *source* package 'VanillaICE' ...
** libs
*** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c viterbi.c -o viterbi.o
viterbi.c: In function 'viterbi':
viterbi.c:61: warning: unused variable 'tp'
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o VanillaICE.so viterbi.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/VanillaICE.buildbin-libdir/VanillaICE/libs/i386
*** arch - ppc
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c viterbi.c -o viterbi.o
viterbi.c: In function 'viterbi':
viterbi.c:61: warning: unused variable 'tp'
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o VanillaICE.so viterbi.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/VanillaICE.buildbin-libdir/VanillaICE/libs/ppc
*** arch - x86_64
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64 -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c viterbi.c -o viterbi.o
viterbi.c: In function 'viterbi':
viterbi.c:61: warning: unused variable 'tp'
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o VanillaICE.so viterbi.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/VanillaICE.buildbin-libdir/VanillaICE/libs/x86_64
** R
** data
** inst
** preparing package for lazy loading
================================================================================
Welcome to oligoClasses version 1.14.0
================================================================================
Large dataset support for 'oligo/crlmm': Disabled
- Load 'ff'
================================================================================
Parallel computing support for 'oligo/crlmm': Disabled
- Load 'ff'
- Load 'snow'
- Use options(cluster=makeCluster(...))
================================================================================
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
================================================================================
Welcome to oligoClasses version 1.14.0
================================================================================
Large dataset support for 'oligo/crlmm': Disabled
- Load 'ff'
================================================================================
Parallel computing support for 'oligo/crlmm': Disabled
- Load 'ff'
- Load 'snow'
- Use options(cluster=makeCluster(...))
================================================================================
Welcome to VanillaICE version 1.14.0
* DONE (VanillaICE)
>>>>>>>
>>>>>>> FIXING LINKS FOR VanillaICE.buildbin-libdir/VanillaICE/libs/i386/VanillaICE.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgcc_s.1.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs/i386/VanillaICE.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs/i386/VanillaICE.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.5.2.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs/i386/VanillaICE.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs/i386/VanillaICE.so"
>>>>>>>
>>>>>>> FIXING LINKS FOR VanillaICE.buildbin-libdir/VanillaICE/libs/ppc/VanillaICE.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgcc_s.1.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs/ppc/VanillaICE.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs/ppc/VanillaICE.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.5.2.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs/ppc/VanillaICE.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs/ppc/VanillaICE.so"
>>>>>>>
>>>>>>> FIXING LINKS FOR VanillaICE.buildbin-libdir/VanillaICE/libs/x86_64/VanillaICE.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgcc_s.1.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs/x86_64/VanillaICE.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs/x86_64/VanillaICE.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.5.2.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs/x86_64/VanillaICE.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs/x86_64/VanillaICE.so"