Package: TEQC

Version: 1.0.0

Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings TEQC_1.0.0.tar.gz

StartedAt: 2011-10-20 14:46:12 -0700 (Thu, 20 Oct 2011)

EndedAt: 2011-10-20 14:47:57 -0700 (Thu, 20 Oct 2011)

EllapsedTime: 105.0 seconds

RetCode: 0

Status:  OK

CheckDir: TEQC.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/TEQC.Rcheck’
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘TEQC/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘TEQC’ version ‘1.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘TEQC’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘TEQC’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (TEQC)

name	user	system	elapsed
chrom.barplot	0.592	0.024	0.619
coverage.GC	1.788	0.004	1.846
coverage.correlation	2.732	0.004	2.750
coverage.density	1.448	0.000	1.461
coverage.hist	1.440	0.000	1.454
coverage.plot	1.396	0.000	1.456
coverage.target	1.340	0.000	1.345
coverage.targetlength.plot	1.744	0.000	1.778
coverage.uniformity	1.369	0.004	1.440
covered.k	1.276	0.000	1.277
duplicates.barplot	7.296	0.068	7.559
fraction.reads.target	0.548	0.004	0.558
fraction.target	0.168	0.000	0.168
get.baits	0.032	0.000	0.032
get.reads	0.284	0.000	0.284
get.targets	0.152	0.004	0.156
insert.size.hist	2.704	0.000	2.790
make.wigfiles	1.584	0.008	1.612
reads2pairs	2.949	0.000	2.965
readsPerTarget	0.900	0.000	0.989