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Package 440/467HostnameOS / ArchBUILDCHECKBUILD BIN
Starr 1.8.1
Benedikt Zacher
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/Starr
Last Changed Rev: 55755 / Revision: 59457
Last Changed Date: 2011-05-20 00:41:11 -0700 (Fri, 20 May 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: Starr
Version: 1.8.1
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch Starr_1.8.1.tar.gz
StartedAt: 2011-10-20 17:40:35 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 17:44:08 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 212.9 seconds
RetCode: 0
Status:  OK 
CheckDir: Starr.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/Starr.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'Starr/DESCRIPTION' ... OK
* this is package 'Starr' version '1.8.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Starr' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking sizes of PDF files under inst/doc ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

Starr.Rcheck/00install.out:

* installing *source* package 'Starr' ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for main in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
*** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386 -DHAVE_ZLIB=1  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c ahocorasick.c -o ahocorasick.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386 -DHAVE_ZLIB=1  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c collect.c -o collect.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386 -DHAVE_ZLIB=1  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c rm_small_peak.c -o rm_small_peak.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386 -DHAVE_ZLIB=1  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c sort_by_genomic.c -o sort_by_genomic.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Starr.so ahocorasick.o collect.o rm_small_peak.o sort_by_genomic.o -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/Starr.Rcheck/Starr/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (Starr)

Starr.Rcheck/Starr-Ex.timings:

nameusersystemelapsed
bpmapToProbeAnno000
cmarrt.ma0.0000.0010.000
cmarrt.peak000
correlationPlot0.0480.0020.050
densityscatter2.7310.1982.942
filterGenes0.0010.0000.000
getMeans000
getProfiles0.0000.0000.001
getRatio0.0000.0000.001
kde2dplot0.6010.0900.696
makeSplines0.0000.0000.001
normalize.Probes0.0000.0000.001
plot.Density1.0330.1691.216
plot.boxes2.0910.3192.418
plot.cmarrt0.0010.0000.001
plot.gcBias2.5790.0652.674
plot.image0.0000.0000.001
plot.ma6.5250.3957.080
plot.posBias6.9880.1997.336
plot.ratioScatter1.8720.1932.080
plot.scatter1.5980.1991.931
plotProfiles0.6480.0350.731
profileplot1.1590.0161.186
read.gffAnno000
readCelFile0.0000.0000.001
remap0.0010.0000.000