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Package 420/467HostnameOS / ArchBUILDCHECKBUILD BIN
SLGI 1.12.0
Nolwenn Le Meur
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/SLGI
Last Changed Rev: 54800 / Revision: 59457
Last Changed Date: 2011-04-13 15:27:35 -0700 (Wed, 13 Apr 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: SLGI
Version: 1.12.0
Command: E:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch SLGI_1.12.0.tar.gz
StartedAt: 2011-10-20 17:03:20 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 17:11:16 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 475.7 seconds
RetCode: 0
Status:  OK  
CheckDir: SLGI.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.8-bioc/meat/SLGI.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'SLGI/DESCRIPTION' ... OK
* this is package 'SLGI' version '1.12.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'SLGI' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 25.4Mb
  sub-directories of 1Mb or more:
    data     13.7Mb
    extdata  11.3Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... NOTE
'library' or 'require' call not declared from: YEAST
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

SLGI.Rcheck/00install.out:

* installing *source* package 'SLGI' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for "plot" in "SLGI"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (SLGI)

SLGI.Rcheck/SLGI-Ex.timings:

nameusersystemelapsed
Atong0.050.000.04
AtongFnDomain7.830.077.94
AtongPair0.900.000.96
SDL000
SGA0.020.000.01
SGD.SL0.140.000.14
TFmat0.20.00.2
byComplex1.110.001.13
comemberIn1.000.021.02
compare37.20 0.4737.79
congruence000
createSquareMatrix0.360.000.36
domainDist4.990.005.02
essglist0.000.010.01
getFASTAname6.400.046.44
getInteraction000
getSharedDomains0.080.010.11
getSharedInteraction0.020.000.02
getTestedPairs000
getUniquePairs0.030.000.03
gi20050.080.000.07
gi20070.200.000.21
gi2Interactome000
hyperG000
iSummary44.83 2.6647.67
modelSLGI50.08 5.6156.30
normInteraction19.79 4.7924.64
plot52.94 5.4759.22
seqMatcherAlign000
sharedBy5.830.025.86
sharedInt000
siResult-class48.58 7.3656.47
test2Interact0.010.000.02
topInteraction27.00 6.0433.12
twoWayTable13.52 0.0813.73
withinComplex1.810.021.88