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Package 382/467HostnameOS / ArchBUILDCHECKBUILD BIN
Rmagpie 1.8.0
Camille Maumet
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/Rmagpie
Last Changed Rev: 54808 / Revision: 59457
Last Changed Date: 2011-04-13 18:03:42 -0700 (Wed, 13 Apr 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: Rmagpie
Version: 1.8.0
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch Rmagpie_1.8.0.tar.gz
StartedAt: 2011-10-20 17:01:58 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 17:04:27 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 148.8 seconds
RetCode: 0
Status:  OK 
CheckDir: Rmagpie.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/Rmagpie.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'Rmagpie/DESCRIPTION' ... OK
* this is package 'Rmagpie' version '1.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Rmagpie' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under inst/doc ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

Rmagpie.Rcheck/00install.out:

* installing *source* package 'Rmagpie' ...
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (Rmagpie)

Rmagpie.Rcheck/Rmagpie-Ex.timings:

nameusersystemelapsed
classifyNewSamples-methods3.4920.1943.702
experiment-class0.1030.0130.116
finalClassifier-class0.1660.0130.179
findFinalClassifier-methods0.3590.0320.395
geneSubsets-class0.0180.0010.018
getDataset-methods0.0220.0020.024
getFeatureSelectionOptions-methods0.0190.0020.020
getFinalClassifier0.3390.1160.456
getResults-methods10.790 0.35711.168
plotErrorsFoldTwoLayerCV-methods10.711 0.03010.752
plotErrorsRepeatedOneLayerCV1.9490.0091.965
plotErrorsSummaryOneLayerCV-methods1.9930.0092.005
rankedGenesImg-methods0.0000.0000.001
runOneLayerExtCV-methods1.6740.0081.698
runTwoLayerExtCV-methods19.421 0.06819.656
setDataset-methods0.0000.0010.001
setFeatureSelectionOptions-methods0.0320.0020.035
thresholds-class0.0030.0000.004
vV70genes0.0100.0010.011