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Package 397/467HostnameOS / ArchBUILDCHECKBUILD BIN
RTCA 1.4.0
Jitao David Zhang
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/RTCA
Last Changed Rev: 54800 / Revision: 59457
Last Changed Date: 2011-04-13 15:27:35 -0700 (Wed, 13 Apr 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ WARNINGS ] OK 

Summary

Package: RTCA
Version: 1.4.0
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch RTCA_1.4.0.tar.gz
StartedAt: 2011-10-20 17:13:30 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 17:14:32 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 61.5 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: RTCA.Rcheck
Warnings: 2

Command output

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/RTCA.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'RTCA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RTCA' version '1.4.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RTCA' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... WARNING
Warning in Sys.setlocale("LC_CTYPE", "en_US.utf8") :
  OS reports request to set locale to "en_US.utf8" cannot be honored
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under inst/doc ... NOTE
  'qpdf' made some significant size reductions:
     compacted 'aboutRTCA.pdf' from 674Kb to 326Kb
  consider running tools::compactPDF() on these files
* checking examples ... WARNING
checking a package with encoding  'UTF-8'  in an ASCII locale

 OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'essentials.R'
 OK
* checking for unstated dependencies in vignettes ... NOTE
'library' or 'require' call not declared from: xtable
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There were 2 warnings, see
  '/Users/biocbuild/bbs-2.8-bioc/meat/RTCA.Rcheck/00check.log'
for details

RTCA.Rcheck/00install.out:

* installing *source* package 'RTCA' ...
** R
** inst
** preparing package for lazy loading
Creating a new generic function for "time" in "RTCA"
Creating a new generic function for "plot" in "RTCA"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (RTCA)

RTCA.Rcheck/RTCA-Ex.timings:

nameusersystemelapsed
RTCA-class0.5300.0040.546
RTCAtimeline-class0.0040.0010.004
alphaNames0.0080.0010.009
combineRTCA0.5290.0130.543
controlView0.5290.0070.537
derivativeTransform0.4030.0060.409
factor2numeric0.0030.0010.003
interpolationTransform1.0090.1191.130
nearestTimeIndex0.4860.0140.501
parseRTCA0.4860.0120.498
plateView0.3680.0040.372
plotGridEffect1.0480.0101.060
ratioTransform0.3920.0050.398
rgrTransform1.0570.0251.084
sliceRTCA0.3970.0050.406
smoothTransform0.7190.0060.726
spectramaxImport0.0170.0060.022