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Package 386/467HostnameOS / ArchBUILDCHECKBUILD BIN
RNAinteract 1.0.0
Bernd Fischer
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/RNAinteract
Last Changed Rev: 54800 / Revision: 59457
Last Changed Date: 2011-04-13 15:27:35 -0700 (Wed, 13 Apr 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  ERROR  skipped  skipped 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: RNAinteract
Version: 1.0.0
Command: E:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch RNAinteract_1.0.0.tar.gz
StartedAt: 2011-10-20 16:44:30 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 16:47:04 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 154.6 seconds
RetCode: 0
Status:  OK  
CheckDir: RNAinteract.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.8-bioc/meat/RNAinteract.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RNAinteract/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RNAinteract' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RNAinteract' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

RNAinteract.Rcheck/00install.out:

* installing *source* package 'RNAinteract' ...
** R
** data
** inst
** preparing package for lazy loading
locfit 1.5-6 	 2010-01-20 
Loading Tcl/Tk interface ... done
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
locfit 1.5-6 	 2010-01-20 
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)

* DONE (RNAinteract)

RNAinteract.Rcheck/RNAinteract-Ex.timings:

nameusersystemelapsed
RNAinteract-class000
bindsamples0.420.000.42
computePI0.050.000.05
computePValues0.240.020.25
embedPCA0.030.000.03
estimateMainEffect1.870.001.88
getData0.210.000.20
getMain0.010.000.02
getReplicateData0.020.000.01
getSampleNames0.010.000.02
getScale0.020.000.01
grid.sgiHeatmap0.110.000.11
normalizeMainEffectQuery0.110.000.11
normalizeMainEffectTemplate0.390.000.40
normalizePlateEffect2.320.032.36
plotDoublePerturbation0.100.000.11
plotHeatmap0.080.020.10
reportAnnotation0.070.000.06
sgi0.010.000.01
sgisubset0.030.000.04
startReport0.050.000.04
summarizeSamples0.260.000.27