Back to the "Multiple platform build/check report" A  B [C] D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 85/467HostnameOS / ArchBUILDCHECKBUILD BIN
ChemmineR 2.4.4
ChemmineR Team
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/ChemmineR
Last Changed Rev: 57645 / Revision: 59457
Last Changed Date: 2011-08-24 14:00:45 -0700 (Wed, 24 Aug 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: ChemmineR
Version: 2.4.4
Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings ChemmineR_2.4.4.tar.gz
StartedAt: 2011-10-20 12:09:47 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 12:12:15 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 148.7 seconds
RetCode: 0
Status:  OK 
CheckDir: ChemmineR.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/ChemmineR.Rcheck’
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ChemmineR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ChemmineR’ version ‘2.4.4’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘ChemmineR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.data.frame.to.str: no visible binding for global variable ‘string’
.gen_atom_pair: no visible global function definition for
  ‘Descriptors_get_len’
.gen_atom_pair: no visible global function definition for
  ‘Descriptors_get_descriptor’
.parse: no visible global function definition for ‘Descriptors’
.parse: no visible global function definition for
  ‘Descriptors_parse_sdf’
cmp.parse: no visible global function definition for ‘batch_parse’
cmp.parse1: no visible global function definition for
  ‘delete_Descriptors’
datablock2ma: no visible binding for global variable ‘sdfset’
sdf_to_desc: no visible global function definition for
  ‘delete_Descriptors’
sdfs_to_desc: no visible global function definition for ‘batch_parse’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... NOTE
'library' or 'require' calls not declared from:
  gplots scatterplot3d
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

ChemmineR.Rcheck/00install.out:

* installing *source* package ‘ChemmineR’ ...
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for "plot" in "ChemmineR"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (ChemmineR)

ChemmineR.Rcheck/ChemmineR-Ex.timings:

nameusersystemelapsed
AP-class17.073 0.09617.728
APset-class16.689 0.07616.888
SDF-class0.0840.0080.107
SDF2apcmp0.0320.0000.032
SDFset-class1.0440.0201.088
SDFset2SDF0.1960.0120.217
SDFset2list0.0880.0240.111
SDFstr-class0.4320.0000.555
ap16.633 0.02416.912
apset0.0120.0000.021
apset2descdb16.825 0.05617.590
atomblock0.3800.0120.410
atomcount0.4560.0000.479
atomprop0.0040.0040.005
bondblock0.3440.0040.351
bonds0.0640.0000.063
cid1.9600.0041.965
cluster.sizestat0.8520.0040.863
cluster.visualize0.9120.0040.948
cmp.cluster1.8520.0081.971
cmp.duplicated0.0760.0000.072
cmp.parse0.0320.0000.035
cmp.parse1000
cmp.search1.0480.0001.047
cmp.similarity0.1000.0000.101
conMA0.1000.0000.107
datablock0.7840.0080.791
datablock2ma0.0480.0040.050
db.explain0.0680.0040.070
db.subset0.0080.0000.007
fp2bit1.0800.0121.110
fpSim0.9050.0080.952
getIds000
grepSDFset0.0840.0040.090
groups0.2960.0000.297
header0.2160.0040.221
makeUnique0.0480.0000.048
plotStruc0.3240.0000.330
pubchemFPencoding0.0040.0000.005
read.SDFset0.880.000.98
read.SDFstr1.3640.0001.471
rings0.9480.0000.973
sdf.subset000
sdf.visualize0.0280.0000.031
sdf2ap16.841 0.03617.590
sdf2list0.0360.0080.051
sdf2smiles000
sdf2str0.0360.0040.041
sdfid0.0560.0000.053
sdfsample0.1000.0000.102
sdfstr2list0.9640.1761.140
searchSim000
searchString000
smiles2sdf000
validSDF0.0440.0000.043
view3.4920.0003.549
write.SDF0.4640.0000.475