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Package 317/436HostnameOS / ArchBUILDCHECKBUILD BIN
plateCore 1.9.0
Errol Strain
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/plateCore
Last Changed Rev: 52668 / Revision: 53255
Last Changed Date: 2011-02-14 09:54:41 -0800 (Mon, 14 Feb 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK  OK  OK 

Summary

Package: plateCore
Version: 1.9.0
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch plateCore_1.9.0.tar.gz
StartedAt: 2011-02-24 20:50:07 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 20:54:34 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 266.7 seconds
RetCode: 0
Status:  OK 
CheckDir: plateCore.Rcheck
Warnings: 0

Command output

* using log directory ‘/Users/biocbuild/bbs-2.8-bioc/meat/plateCore.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘plateCore/DESCRIPTION’ ... OK
* this is package ‘plateCore’ version ‘1.9.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘plateCore’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

plateCore.Rcheck/00install.out:

* installing *source* package ‘plateCore’ ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
Scalable Robust Estimators with High Breakdown Point (version 1.1-00)

Attaching package: 'flowCore'

The following object(s) are masked from 'package:stats':

    alias, filter

Loading required package: lattice
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
Loading required package: RColorBrewer

Attaching package: 'latticeExtra'

The following object(s) are masked from 'package:flowViz':

    ecdfplot

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (plateCore)

plateCore.Rcheck/plateCore-Ex.timings:

nameusersystemelapsed
Subset-methods5.3620.2595.722
applyControlGates-methods22.149 0.56122.804
compensate-methods7.9560.3938.423
compensationSet0.3720.0220.395
densityplot-methods2.4760.0962.584
fixAutoFl-methods8.4060.6089.084
flowPlate-class4.9830.2165.228
flowPlate-method4.9590.2185.233
fpbind-methods10.630 0.52211.285
getGroups-methods2.1800.1002.302
gutterPlot-methods2.1760.1052.291
mfiPlot-methods22.696 0.35623.196
on-methods13.489 0.37114.081
panel.densityplot.flowPlate2.5150.0942.621
panel.xyplot.flowPlate2.4160.0872.510
plateCore-package4.7500.2305.008
plateSet-methods5.0580.2425.418
plotPlate-methods5.3300.2865.695
prepanel.densityplot.flowPlate2.4370.0872.552
prepanel.xyplot.flowPlate2.3850.0892.532
setControlGates-methods5.2740.2285.557
summaryStats-methods22.748 0.34323.285
wellAnnotation-methods2.0990.0872.209
xyplot-methods2.4550.0932.565