Package: occugene

Version: 1.11.0

Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch occugene_1.11.0.tar.gz

StartedAt: 2011-02-24 16:22:47 -0800 (Thu, 24 Feb 2011)

EndedAt: 2011-02-24 16:23:07 -0800 (Thu, 24 Feb 2011)

EllapsedTime: 19.8 seconds

RetCode: 0

Status:  OK

CheckDir: occugene.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/occugene.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'occugene/DESCRIPTION' ... OK
* this is package 'occugene' version '1.11.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'occugene' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'occugene' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (occugene)

name	user	system	elapsed
binHist	0	0	0
binInsert	0	0	0
binInsertHist	0.000	0.000	0.001
checkFormat	0.016	0.001	0.018
delta0	0.089	0.003	0.091
eMult	1.182	0.002	1.184
etDelta	0.010	0.001	0.011
fCumul	0	0	0
fFit	0.090	0.002	0.092
loadAnnotation	0.000	0.000	0.001
loadInsertions	0.000	0.000	0.001
occup2Negenes	0.009	0.001	0.010
unbiasB0	0.892	0.001	0.893
unbiasDelta0	1.036	0.001	1.037
varMult	1.105	0.000	1.106