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Package 265/436HostnameOS / ArchBUILDCHECKBUILD BIN
methylumi 1.7.5
Sean Davis
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/methylumi
Last Changed Rev: 52494 / Revision: 53255
Last Changed Date: 2011-02-05 12:44:23 -0800 (Sat, 05 Feb 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK  OK  OK 

Summary

Package: methylumi
Version: 1.7.5
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch methylumi_1.7.5.tar.gz
StartedAt: 2011-02-24 20:20:23 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 20:21:37 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 73.8 seconds
RetCode: 0
Status:  OK 
CheckDir: methylumi.Rcheck
Warnings: 0

Command output

* using log directory ‘/Users/biocbuild/bbs-2.8-bioc/meat/methylumi.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘methylumi/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘methylumi’ version ‘1.7.5’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘methylumi’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: estimateM.Rd:34-36: Dropping empty section \seealso
prepare_Rd: estimateM.Rd:37-39: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

methylumi.Rcheck/00install.out:

* installing *source* package ‘methylumi’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "summary" in "methylumi"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (methylumi)

methylumi.Rcheck/methylumi-Ex.timings:

nameusersystemelapsed
MethyLumi-class0.9540.0360.991
MethyLumiM-class0.0030.0000.003
MethyLumiQC-class0.0020.0000.003
MethyLumiSet-class0.0020.0010.003
extractBarcodeAndPosition0.0070.0000.006
featureFilter1.9340.0722.012
getAssayDataNameSubstitutions0.0060.0010.008
methylumiR0.9380.0280.967
mldat0.0860.0030.090
normalizeMethyLumiSet1.1770.0271.205
plotSampleIntensities0.1130.0050.117
qcplot0.4860.0050.492
varFilter1.1090.0111.121