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Package 214/436HostnameOS / ArchBUILDCHECKBUILD BIN
imageHTS 1.1.8
Gregoire Pau
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/imageHTS
Last Changed Rev: 52938 / Revision: 53255
Last Changed Date: 2011-02-17 01:34:27 -0800 (Thu, 17 Feb 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ WARNINGS ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64 N O T   S U P P O R T E D
pelham Mac OS X Leopard (10.5.8) / i386 N O T   S U P P O R T E D
petty Mac OS X Snow Leopard (10.6.4) / i386 N O T   S U P P O R T E D

Summary

Package: imageHTS
Version: 1.1.8
Command: E:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings imageHTS_1.1.8.tar.gz
StartedAt: 2011-02-24 18:30:00 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 18:33:43 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 222.3 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: imageHTS.Rcheck
Warnings: 1

Command output

* using log directory 'E:/biocbld/bbs-2.8-bioc/meat/imageHTS.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'imageHTS/DESCRIPTION' ... OK
* this is package 'imageHTS' version '1.1.8'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'imageHTS' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  well2wellid
All user-level objects in a package should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  'E:/biocbld/bbs-2.8-bioc/meat/imageHTS.Rcheck/00check.log'
for details

imageHTS.Rcheck/00install.out:

* installing *source* package 'imageHTS' ...
** R
** inst
** preparing package for lazy loading
Loading required package: abind
Loading required package: RColorBrewer
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.


Attaching package: 'Biobase'

The following object(s) are masked from 'package:EBImage':

    channel, combine

Loading required package: genefilter
Loading required package: splots
Loading required package: vsn
Loading required package: hwriter
Loading required package: locfit
Loading required package: akima
Loading required package: lattice
locfit 1.5-6 	 2010-01-20 
Loading required package: grid
Scalable Robust Estimators with High Breakdown Point (version 1.1-00)
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (imageHTS)

imageHTS.Rcheck/imageHTS-Ex.timings:

nameusersystemelapsed
collectCellFeatures000
countObjects19.44 0.9121.06
extractFeatures38.05 5.9744.47
fileHTS4.940.017.22
getImageConf2.310.002.32
getUnames4.760.024.82
getWellFeatures6.110.016.18
highlightSegmentation000
installCellPicker3.320.023.64
parseDCF0.00.00.1
parseImageConf2.290.012.34
popCellPicker2.330.002.33
prw2uname000
readLearnTS000
segmentATH000
segmentWells13.90 1.1115.31
summarizeWells000
zprime4.750.024.81