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Package 173/436HostnameOS / ArchBUILDCHECKBUILD BIN
genomes 1.7.0
Chris Stubben
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/genomes
Last Changed Rev: 50295 / Revision: 53255
Last Changed Date: 2010-10-17 22:57:44 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK  OK  OK 

Summary

Package: genomes
Version: 1.7.0
Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings genomes_1.7.0.tar.gz
StartedAt: 2011-02-24 19:52:00 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 19:52:44 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 43.6 seconds
RetCode: 0
Status:  OK 
CheckDir: genomes.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/genomes.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘genomes/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘genomes’ version ‘1.7.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘genomes’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

genomes.Rcheck/00install.out:

* installing *source* package ‘genomes’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (genomes)

genomes.Rcheck/genomes-Ex.timings:

nameusersystemelapsed
doublingTime0.1920.0040.196
genomes-lines0.1560.0040.161
genomes-plot0.1480.0000.151
genomes-print0.0840.0000.085
genomes-subset0.120.000.12
genomes-summary0.0200.0000.019
genomes-update0.0040.0000.003
genomes0.1560.0040.158
genus0.2600.0080.267
gold1.3160.0201.335
hmp0.0680.0000.070
image20.4280.0000.424
lenvs0.020.000.02
leuks0.1160.0000.117
like0.0800.0000.083
lproks0.2080.0000.209
plotby0.2360.0120.248
species0.3000.0040.302
table20.0120.0000.012
taxid2names0.0080.0040.675
term2neighbor0.0520.0001.081
term2summary1.5080.0367.537
top0.2560.0040.259
virus0.0720.0041.113