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Package 296/436HostnameOS / ArchBUILDCHECKBUILD BIN
OTUbase 1.1.1
Daniel Beck
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/OTUbase
Last Changed Rev: 51745 / Revision: 53255
Last Changed Date: 2011-01-03 12:00:08 -0800 (Mon, 03 Jan 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK  OK  OK 

Summary

Package: OTUbase
Version: 1.1.1
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch OTUbase_1.1.1.tar.gz
StartedAt: 2011-02-24 20:38:33 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 20:40:54 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 140.7 seconds
RetCode: 0
Status:  OK 
CheckDir: OTUbase.Rcheck
Warnings: 0

Command output

* using log directory ‘/Users/biocbuild/bbs-2.8-bioc/meat/OTUbase.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘OTUbase/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘OTUbase’ version ‘1.1.1’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘OTUbase’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

OTUbase.Rcheck/00install.out:

* installing *source* package ‘OTUbase’ ...
** R
** inst
** preparing package for lazy loading
Loading required package: IRanges

Attaching package: 'IRanges'

The following object(s) are masked from 'package:base':

    Map, cbind, eval, intersect, mapply, order, paste, pmax, pmax.int,
    pmin, pmin.int, rbind, rep.int, setdiff, table, union

Loading required package: GenomicRanges
Loading required package: Biostrings
Loading required package: lattice
Loading required package: Rsamtools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.


Attaching package: 'Biobase'

The following object(s) are masked from 'package:IRanges':

    updateObject

This is vegan 1.17-7
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
================================================================================
Welcome to OTUbase version 1.1.1

* DONE (OTUbase)

OTUbase.Rcheck/OTUbase-Ex.timings:

nameusersystemelapsed
OTUset-class1.0230.0151.062
TAXset-class0.6820.0040.686
abundance0.2880.0240.314
accessors0.1920.0140.207
assignmentData0.1640.0030.168
clusterSamples0.1780.0050.191
other_functions0.1880.0040.194
other_generics0.1710.0040.181
readOTUset0.1680.0030.171
readTAXset0.1410.0040.146
sampleData0.1690.0030.174
subOTUset0.2080.0040.213
subTAXset0.1570.0050.166