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leeBamViews 0.99.11
VJ Carey
Snapshot Date: 2011-04-06 12:27:26 -0700 (Wed, 06 Apr 2011)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/leeBamViews
Last Changed Rev: 1361 / Revision: 1510
Last Changed Date: 2010-10-14 21:15:12 -0700 (Thu, 14 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK [ OK ] OK 
petty Mac OS X Snow Leopard (10.6.6) / i386  OK  OK  OK 

Summary

Package: leeBamViews
Version: 0.99.11
Command: D:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings leeBamViews_0.99.11.tar.gz
StartedAt: 2011-04-06 16:23:46 -0700 (Wed, 06 Apr 2011)
EndedAt: 2011-04-06 16:26:38 -0700 (Wed, 06 Apr 2011)
EllapsedTime: 172.0 seconds
RetCode: 0
Status:  OK  
CheckDir: leeBamViews.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.7-data-experiment/meat/leeBamViews.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'leeBamViews/DESCRIPTION' ... OK
* this is package 'leeBamViews' version '0.99.11'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'leeBamViews' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'lbvtest.R'
 OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

leeBamViews.Rcheck/00install.out:

* installing *source* package 'leeBamViews' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: IRanges

Attaching package: 'IRanges'

The following object(s) are masked from 'package:Biobase':

    updateObject

The following object(s) are masked from 'package:base':

    Map, cbind, eval, mapply, order, paste, pmax, pmax.int, pmin,
    pmin.int, rbind, rep.int, table

Loading required package: GenomicRanges
Loading required package: Biostrings
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (leeBamViews)

leeBamViews.Rcheck/leeBamViews-Ex.timings:

nameusersystemelapsed
bs11.340.031.59
leeRPKM0.050.000.05
leeUnn0.080.010.09
tabulateReads7.170.137.35
totalReadCounts1.650.021.67