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Package 393/419HostnameOS / ArchBUILDCHECKBUILD BIN
SRAdb 1.4.1
Jack Zhu
Snapshot Date: 2011-04-06 23:24:01 -0700 (Wed, 06 Apr 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/SRAdb
Last Changed Rev: 51835 / Revision: 54588
Last Changed Date: 2011-01-08 07:01:40 -0800 (Sat, 08 Jan 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 

Summary

Package: SRAdb
Version: 1.4.1
Command: /home/biocbuild/bbs-2.7-bioc/R/bin/R CMD check --no-vignettes --timings SRAdb_1.4.1.tar.gz
StartedAt: 2011-04-07 09:21:25 -0700 (Thu, 07 Apr 2011)
EndedAt: 2011-04-07 09:22:05 -0700 (Thu, 07 Apr 2011)
EllapsedTime: 40.8 seconds
RetCode: 0
Status:  OK 
CheckDir: SRAdb.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/SRAdb.Rcheck’
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SRAdb/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘SRAdb’ version ‘1.4.1’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘SRAdb’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

SRAdb.Rcheck/00install.out:

* installing *source* package ‘SRAdb’ ...
** R
** inst
** preparing package for lazy loading
Loading required package: bitops
Loading required package: DBI
Setting options('download.file.method'='curl')
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (SRAdb)

SRAdb.Rcheck/SRAdb-Ex.timings:

nameusersystemelapsed
IGVclear0.0000.0000.001
IGVcollapse000
IGVgenome000
IGVgoto0.0040.0000.000
IGVload000
IGVsession0.0040.0000.005
IGVsnapshot000
IGVsocket000
IGVsort000
SRAdb-package0.0120.0000.013
colDescriptions0.0040.0000.001
entityGraph0.0000.0000.001
getSRA0.0040.0000.003
getSRAdbFile000
getSRAfile0.0040.0000.000
getSRAinfo0.0000.0000.001
listSRAfile0.0000.0000.001
sraConvert0.0040.0000.001
sraGraph0.0000.0000.002
startIGV0.0000.0000.001