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Package 188/419HostnameOS / ArchBUILDCHECKBUILD BIN
graph 1.28.0
Seth Falcon
Snapshot Date: 2011-03-30 23:22:56 -0700 (Wed, 30 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/graph
Last Changed Rev: 50293 / Revision: 54281
Last Changed Date: 2010-10-17 22:34:23 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ WARNINGS ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: graph
Version: 1.28.0
Command: E:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings graph_1.28.0.tar.gz
StartedAt: 2011-03-31 06:52:24 -0700 (Thu, 31 Mar 2011)
EndedAt: 2011-03-31 06:53:46 -0700 (Thu, 31 Mar 2011)
EllapsedTime: 82.8 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: graph.Rcheck
Warnings: 1

Command output

* using log directory 'E:/biocbld/bbs-2.7-bioc/meat/graph.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'graph/DESCRIPTION' ... OK
* this is package 'graph' version '1.28.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... WARNING
Subdirectory 'src' contains:
  BioC_graph.dll
These are unlikely file names for src files.
* checking whether package 'graph' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... NOTE
'library' or 'require' call not declared from: Rgraphviz
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'graph_unit_tests.R'
 OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  'E:/biocbld/bbs-2.7-bioc/meat/graph.Rcheck/00check.log'
for details

graph.Rcheck/00install.out:

* installing *source* package 'graph' ...
** libs
gcc -I"E:/biocbld/BBS-2˜1.7-B/R/include"         -O3 -Wall  -std=gnu99 -c graph.c -o graph.o
gcc -shared -s -static-libgcc -o graph.dll tmp.def graph.o -LE:/biocbld/BBS-2˜1.7-B/R/bin/i386 -lR
mv graph.dll BioC_graph.dll
installing to E:/biocbld/bbs-2.7-bioc/meat/graph.Rcheck/graph/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (graph)

graph.Rcheck/graph-Ex.timings:

nameusersystemelapsed
DFS0.080.000.08
IMCA0.260.000.26
MAPKsig0.140.000.36
MultiGraph-class0.100.000.09
acc-methods0.030.000.04
addEdge0.010.000.01
addNode0.020.000.02
adj-methods000
apoptosisGraph0.030.000.03
attrData-class000
aveNumEdges0.030.000.04
biocRepos000
boundary0.020.000.01
buildRepDepGraph000
calcProb000
calcSumProb0.010.000.02
clearNode0.020.000.01
clusterGraph-class000
clusteringCoefficient-methods0.010.000.02
combineNodes0.050.000.04
distGraph-class000
duplicatedEdges000
edgeMatrix0.010.000.02
edgeSets0.060.000.06
edgeWeights0.020.000.02
fromGXL-methods0.550.000.57
graph-class0.010.000.02
graph2SparseM0.210.010.22
graphAM-class0.060.000.06
graphBAM-class0.080.000.08
graphExamples000
graphNEL-class000
inEdges000
leaves0.030.000.04
listEdges0.020.000.01
matrix2Graph0.030.000.03
mostEdges0.060.000.06
numNoEdges000
pancrCaIni0.110.000.11
randomEGraph0.020.000.02
randomGraph0.010.000.02
randomNodeGraph000
removeEdge0.020.000.01
removeNode0.010.000.02
renderInfo-class0.020.000.01
reverseEdgeDirections000
simpleEdge-class000
standardLabeling0.280.000.28
subGraph000
toDotR-methods0.080.000.08
ugraph0.010.000.02
validGraph000