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Package 67/419HostnameOS / ArchBUILDCHECKBUILD BIN
Category 2.16.1
Biocore Team c/o BioC user list
Snapshot Date: 2011-03-30 23:22:56 -0700 (Wed, 30 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/Category
Last Changed Rev: 53120 / Revision: 54281
Last Changed Date: 2011-02-23 13:31:41 -0800 (Wed, 23 Feb 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: Category
Version: 2.16.1
Command: /home/biocbuild/bbs-2.7-bioc/R/bin/R CMD check --no-vignettes --timings Category_2.16.1.tar.gz
StartedAt: 2011-03-31 04:55:07 -0700 (Thu, 31 Mar 2011)
EndedAt: 2011-03-31 04:57:38 -0700 (Thu, 31 Mar 2011)
EllapsedTime: 151.7 seconds
RetCode: 0
Status:  OK 
CheckDir: Category.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/Category.Rcheck’
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Category/DESCRIPTION’ ... OK
* this is package ‘Category’ version ‘2.16.1’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘Category’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

Category.Rcheck/00install.out:

* installing *source* package ‘Category’ ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (Category)

Category.Rcheck/Category-Ex.timings:

nameusersystemelapsed
ChrBandTree-class25.541 0.09625.641
ChrMapHyperGParams-class0.0040.0000.002
ChrMapHyperGResult-class0.0000.0000.001
ChrMapLinearMParams-class0.0000.0040.001
ChrMapLinearMResult-class0.0000.0000.001
DatPkg-class0.0840.0000.084
HyperGResult-accessors0.8720.0281.045
LinearMParams-class0.0000.0000.001
LinearMResult-class0.0000.0000.001
LinearMResultBase-class0.0000.0000.001
MAPAmat15.181 0.08415.264
applyByCategory0.0040.0000.003
cateGOryMatrix0.4400.0120.636
cb_parse_band_Hs0.0000.0000.001
cb_parse_band_Mm000
findAMstats0.0040.0000.002
getPathNames0.1640.0040.167
gseattperm3.7730.0764.019
makeChrBandGraph12.964 0.05213.017
makeEBcontr0.3640.0040.369
probes2MAP0.2640.0080.272
probes2Path0.1000.0080.108
ttperm0.0280.0000.030