BioC 2.6: CHECK report for xps on pelham

Package: xps

Version: 1.8.3

Command: /Library/Frameworks/R.framework/Versions/2.11/Resources/bin/R CMD check --no-vignettes --timings xps_1.8.3.tar.gz

StartedAt: 2010-10-04 19:04:25 -0700 (Mon, 04 Oct 2010)

EndedAt: 2010-10-04 19:09:37 -0700 (Mon, 04 Oct 2010)

EllapsedTime: 312.8 seconds

RetCode: 0

Status: OK

CheckDir: xps.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.6-bioc/meat/xps.Rcheck'
* using R version 2.11.1 Patched (2010-05-31 r52167)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'xps/DESCRIPTION' ... OK
* this is package 'xps' version '1.8.3'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'xps' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* install options are ' --no-html'

* installing *source* package ‘xps’ ...
checking for gcc... gcc -arch i386 -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -arch i386 -std=gnu99 accepts -g... yes
checking for gcc -arch i386 -std=gnu99 option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -arch i386 -std=gnu99 -E
checking for gcc... (cached) gcc -arch i386 -std=gnu99
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc -arch i386 -std=gnu99 accepts -g... (cached) yes
checking for gcc -arch i386 -std=gnu99 option to accept ANSI C... (cached) none needed
found ROOT version 5.27/04 in directory /usr/local/root
** libs
** arch - i386
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c TMLMath.cxx
TMLMath.cxx:1109:1: warning: "xmax" redefined
TMLMath.cxx:1060:1: warning: this is the location of the previous definition
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c TStat.cxx
In file included from TStat.cxx:53:
TStat.h:323: warning: unused parameter ‘x’
TStat.h:324: warning: unused parameter ‘x’
TStat.h:325: warning: unused parameter ‘x’
TStat.h:326: warning: unused parameter ‘x’
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c StatUtils.cxx
In file included from StatUtils.cxx:58:
TStat.h:323: warning: unused parameter ‘x’
TStat.h:324: warning: unused parameter ‘x’
TStat.h:325: warning: unused parameter ‘x’
TStat.h:326: warning: unused parameter ‘x’
StatUtils.cxx:240: warning: unused parameter ‘df’
StatUtils.cxx:264: warning: unused parameter ‘df’
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c XPSBase.cxx
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c XPSUtils.cxx
In file included from XPSUtils.cxx:79:
TStat.h:323: warning: unused parameter ‘x’
TStat.h:324: warning: unused parameter ‘x’
TStat.h:325: warning: unused parameter ‘x’
TStat.h:326: warning: unused parameter ‘x’
XPSUtils.cxx:1324: warning: unused parameter ‘canvasname’
XPSUtils.cxx:1324: warning: unused parameter ‘treename’
XPSUtils.cxx:1324: warning: unused parameter ‘varexp’
XPSUtils.cxx:1324: warning: unused parameter ‘selection’
XPSUtils.cxx:1324: warning: unused parameter ‘opt’
XPSUtils.cxx:1713: warning: unused parameter ‘min’
XPSUtils.cxx:1713: warning: unused parameter ‘max’
XPSUtils.cxx:2108: warning: unused parameter ‘n’
XPSUtils.cxx:2108: warning: unused parameter ‘x’
XPSUtils.cxx:2108: warning: unused parameter ‘y’
XPSUtils.cxx:2108: warning: unused parameter ‘z’
XPSUtils.cxx:2108: warning: unused parameter ‘opt’
XPSUtils.cxx:2616: warning: unused parameter ‘index’
XPSUtils.cxx:3069: warning: unused parameter ‘n’
XPSUtils.cxx:3069: warning: unused parameter ‘colors’
XPSUtils.cxx:3069: warning: unused parameter ‘priority’
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c XPSSchemes.cxx
XPSSchemes.cxx:10004: warning: unused parameter ‘index’
XPSSchemes.cxx:10015: warning: unused parameter ‘index’
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c XPSDataTypes.cxx
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c XPSProjectHandler.cxx
In file included from XPSProjectHandler.cxx:47:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c XPSData.cxx
In file included from XPSData.h:47,
                 from XPSData.cxx:79:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSData.cxx:79:
XPSData.h:678: warning: unused parameter ‘min’
XPSData.h:678: warning: unused parameter ‘max’
XPSData.h:678: warning: unused parameter ‘var2sort’
XPSData.h:678: warning: unused parameter ‘down’
XPSData.cxx:498: warning: unused parameter ‘name’
XPSData.cxx: In member function ‘virtual Int_t XGeneChipHyb::ReadData(std::ifstream&, const Option_t*, const char*, char, Int_t)’:
XPSData.cxx:1763: warning: label ‘cleanup’ defined but not used
XPSData.cxx: In member function ‘virtual Int_t XGeneChipHyb::ReadXDAData(std::ifstream&, const Option_t*, const char*, char, Int_t)’:
XPSData.cxx:1954: warning: label ‘cleanup’ defined but not used
XPSData.cxx: In member function ‘virtual Int_t XGeneChipHyb::ReadXMLHeader(std::ifstream&, const char*, char)’:
XPSData.cxx:2476: warning: unused variable ‘fNMasked’
XPSData.cxx:2486: warning: unused variable ‘fNOutlier’
XPSData.cxx:2496: warning: unused variable ‘fNModified’
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c XPSProcessing.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSProcessing.cxx:68:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSProcessing.cxx:68:
XPSData.h:678: warning: unused parameter ‘min’
XPSData.h:678: warning: unused parameter ‘max’
XPSData.h:678: warning: unused parameter ‘var2sort’
XPSData.h:678: warning: unused parameter ‘down’
XPSProcessing.cxx:745: warning: unused parameter ‘name’
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c XPSHybridizer.cxx
In file included from XPSHybridizer.cxx:63:
TStat.h:323: warning: unused parameter ‘x’
TStat.h:324: warning: unused parameter ‘x’
TStat.h:325: warning: unused parameter ‘x’
TStat.h:326: warning: unused parameter ‘x’
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSHybridizer.h:42,
                 from XPSHybridizer.cxx:64:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSHybridizer.h:42,
                 from XPSHybridizer.cxx:64:
XPSData.h:678: warning: unused parameter ‘min’
XPSData.h:678: warning: unused parameter ‘max’
XPSData.h:678: warning: unused parameter ‘var2sort’
XPSData.h:678: warning: unused parameter ‘down’
In file included from XPSHybridizer.cxx:64:
XPSHybridizer.h:176: warning: unused parameter ‘n’
XPSHybridizer.h:176: warning: unused parameter ‘x’
XPSHybridizer.h:176: warning: unused parameter ‘y’
XPSHybridizer.h:176: warning: unused parameter ‘z’
XPSHybridizer.h:176: warning: unused parameter ‘dx’
XPSHybridizer.h:176: warning: unused parameter ‘dy’
XPSHybridizer.h:176: warning: unused parameter ‘idx’
XPSHybridizer.h:176: warning: unused parameter ‘nsub’
XPSHybridizer.h:176: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:435: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:176: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:435: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:176: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:435: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:176: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:434: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:176: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:434: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:176: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:434: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.cxx:1663: warning: unused parameter ‘num’
XPSHybridizer.cxx:1776: warning: unused parameter ‘num’
XPSHybridizer.cxx:1959: warning: unused parameter ‘value1’
XPSHybridizer.cxx:1959: warning: unused parameter ‘value2’
XPSHybridizer.cxx:1959: warning: unused parameter ‘num’
XPSHybridizer.cxx:2083: warning: unused parameter ‘num’
XPSHybridizer.cxx:2343: warning: unused parameter ‘msk’
XPSHybridizer.cxx:2387: warning: unused parameter ‘x’
XPSHybridizer.cxx:2387: warning: unused parameter ‘scale’
XPSHybridizer.cxx:2575: warning: unused parameter ‘x’
XPSHybridizer.cxx:2575: warning: unused parameter ‘scale’
XPSHybridizer.cxx:3622: warning: unused parameter ‘msk’
XPSHybridizer.cxx:3682: warning: unused parameter ‘msk’
XPSHybridizer.cxx:4255: warning: unused parameter ‘msk’
XPSHybridizer.cxx: In member function ‘Double_t XDetectionCall::WilcoxTest(Int_t, Double_t*, Double_t)’:
XPSHybridizer.cxx:1857: warning: ‘pval’ may be used uninitialized in this function
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c XPSSelector.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSSelector.h:42,
                 from XPSSelector.cxx:52:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSSelector.h:42,
                 from XPSSelector.cxx:52:
XPSData.h:678: warning: unused parameter ‘min’
XPSData.h:678: warning: unused parameter ‘max’
XPSData.h:678: warning: unused parameter ‘var2sort’
XPSData.h:678: warning: unused parameter ‘down’
In file included from XPSSelector.cxx:52:
XPSSelector.h:152: warning: ‘virtual Int_t XProbeSelector::Calculate(Int_t, Double_t*, Double_t*, Int_t*)’ was hidden
XPSSelector.h:209: warning:   by ‘XUnitSelector::Calculate’
XPSSelector.cxx:316: warning: unused parameter ‘max’
XPSSelector.cxx:316: warning: unused parameter ‘showGraph’
XPSSelector.cxx: In member function ‘Double_t XRankSelector::Cutoff(Int_t, const Double_t*, Double_t, Bool_t)’:
XPSSelector.cxx:334: warning: ‘par0’ may be used uninitialized in this function
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c XPSNormalizer.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSNormalizer.h:42,
                 from XPSNormalizer.cxx:63:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSNormalizer.h:42,
                 from XPSNormalizer.cxx:63:
XPSData.h:678: warning: unused parameter ‘min’
XPSData.h:678: warning: unused parameter ‘max’
XPSData.h:678: warning: unused parameter ‘var2sort’
XPSData.h:678: warning: unused parameter ‘down’
In file included from XPSNormalizer.cxx:64:
TStat.h:323: warning: unused parameter ‘x’
TStat.h:324: warning: unused parameter ‘x’
TStat.h:325: warning: unused parameter ‘x’
TStat.h:326: warning: unused parameter ‘x’
XPSNormalizer.cxx:533: warning: unused parameter ‘xout’
XPSNormalizer.cxx:610: warning: unused parameter ‘xout’
XPSNormalizer.cxx:689: warning: unused parameter ‘xout’
XPSNormalizer.cxx:1129: warning: unused parameter ‘n’
XPSNormalizer.cxx:1160: warning: unused parameter ‘n’
XPSNormalizer.cxx:1297: warning: unused parameter ‘x’
XPSNormalizer.cxx:1297: warning: unused parameter ‘msk’
XPSNormalizer.cxx: In member function ‘virtual Int_t XNormalizer::Calculate(Int_t, Double_t*, Double_t*, Int_t*)’:
XPSNormalizer.cxx:240: warning: ‘his2sel’ may be used uninitialized in this function
XPSNormalizer.cxx:239: warning: ‘his2all’ may be used uninitialized in this function
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c XPSPreProcessing.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSPreProcessing.h:42,
                 from XPSPreProcessing.cxx:90:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSPreProcessing.h:42,
                 from XPSPreProcessing.cxx:90:
XPSData.h:678: warning: unused parameter ‘min’
XPSData.h:678: warning: unused parameter ‘max’
XPSData.h:678: warning: unused parameter ‘var2sort’
XPSData.h:678: warning: unused parameter ‘down’
In file included from XPSPreProcessing.cxx:91:
XPSHybridizer.h:176: warning: unused parameter ‘n’
XPSHybridizer.h:176: warning: unused parameter ‘x’
XPSHybridizer.h:176: warning: unused parameter ‘y’
XPSHybridizer.h:176: warning: unused parameter ‘z’
XPSHybridizer.h:176: warning: unused parameter ‘dx’
XPSHybridizer.h:176: warning: unused parameter ‘dy’
XPSHybridizer.h:176: warning: unused parameter ‘idx’
XPSHybridizer.h:176: warning: unused parameter ‘nsub’
XPSHybridizer.h:176: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:435: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:176: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:435: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:176: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:435: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:176: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:434: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:176: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:434: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:176: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:434: warning:   by ‘XAlgorithm::Calculate’
In file included from XPSPreProcessing.cxx:92:
XPSSelector.h:152: warning: ‘virtual Int_t XProbeSelector::Calculate(Int_t, Double_t*, Double_t*, Int_t*)’ was hidden
XPSSelector.h:209: warning:   by ‘XUnitSelector::Calculate’
In file included from XPSPreProcessing.cxx:94:
TStat.h:323: warning: unused parameter ‘x’
TStat.h:324: warning: unused parameter ‘x’
TStat.h:325: warning: unused parameter ‘x’
TStat.h:326: warning: unused parameter ‘x’
XPSPreProcessing.cxx: In member function ‘virtual Int_t XGCProcesSet::DoMultichipCall(Int_t, TTree**, Int_t&, TTree**, TFile*)’:
XPSPreProcessing.cxx:2651: warning: operation on ‘numsels’ may be undefined
XPSPreProcessing.cxx: In member function ‘virtual Int_t XGCProcesSet::DoMultichipExpress(Int_t, TTree**, Int_t, TTree**, TFile*)’:
XPSPreProcessing.cxx:3533: warning: operation on ‘numsels’ may be undefined
XPSPreProcessing.cxx: At global scope:
XPSPreProcessing.cxx:4867: warning: unused parameter ‘bgrd’
XPSPreProcessing.cxx:4867: warning: unused parameter ‘bgdev’
XPSPreProcessing.cxx:4921: warning: unused parameter ‘algorithm’
XPSPreProcessing.cxx:4941: warning: unused parameter ‘algorithm’
XPSPreProcessing.cxx:5329: warning: unused parameter ‘nrow’
XPSPreProcessing.cxx: In member function ‘virtual Int_t XExonProcesSet::DoSpliceExpress(Int_t, TTree**, Int_t, TTree**, TFile*)’:
XPSPreProcessing.cxx:6184: warning: operation on ‘numsels’ may be undefined
XPSPreProcessing.cxx:6375: warning: unused variable ‘numatoms’
XPSPreProcessing.cxx:5987: warning: unused variable ‘x’
XPSPreProcessing.cxx:5988: warning: unused variable ‘y’
XPSPreProcessing.cxx:5993: warning: unused variable ‘stepout’
XPSPreProcessing.cxx: In member function ‘virtual TTree* XExonProcesSet::SchemeTree(XAlgorithm*, void*, TLeaf**)’:
XPSPreProcessing.cxx:6938: warning: unused variable ‘scheme_ptr_ptr’
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c XPSNormation.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSNormation.h:42,
                 from XPSNormation.cxx:70:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSNormation.h:42,
                 from XPSNormation.cxx:70:
XPSData.h:678: warning: unused parameter ‘min’
XPSData.h:678: warning: unused parameter ‘max’
XPSData.h:678: warning: unused parameter ‘var2sort’
XPSData.h:678: warning: unused parameter ‘down’
In file included from XPSNormation.cxx:71:
XPSSelector.h:152: warning: ‘virtual Int_t XProbeSelector::Calculate(Int_t, Double_t*, Double_t*, Int_t*)’ was hidden
XPSSelector.h:209: warning:   by ‘XUnitSelector::Calculate’
In file included from XPSNormation.cxx:73:
TStat.h:323: warning: unused parameter ‘x’
TStat.h:324: warning: unused parameter ‘x’
TStat.h:325: warning: unused parameter ‘x’
TStat.h:326: warning: unused parameter ‘x’
XPSNormation.cxx:182: warning: unused parameter ‘infile’
XPSNormation.cxx:988: warning: unused parameter ‘method’
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c XPSFilter.cxx
In file included from XPSFilter.h:49,
                 from XPSFilter.cxx:44:
TStat.h:323: warning: unused parameter ‘x’
TStat.h:324: warning: unused parameter ‘x’
TStat.h:325: warning: unused parameter ‘x’
TStat.h:326: warning: unused parameter ‘x’
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSFilter.h:52,
                 from XPSFilter.cxx:44:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSFilter.h:52,
                 from XPSFilter.cxx:44:
XPSData.h:678: warning: unused parameter ‘min’
XPSData.h:678: warning: unused parameter ‘max’
XPSData.h:678: warning: unused parameter ‘var2sort’
XPSData.h:678: warning: unused parameter ‘down’
In file included from XPSFilter.cxx:44:
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:434: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:434: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:120: warning: ‘virtual Int_t XFilter::Calculate(Int_t, TTree**, const char*, TTree*, const char*)’ was hidden
XPSBase.h:434: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.cxx:621: warning: unused parameter ‘sepo’
XPSFilter.cxx:1351: warning: unused parameter ‘table’
XPSFilter.cxx:1630: warning: unused parameter ‘infile’
XPSFilter.cxx:1630: warning: unused parameter ‘outfile’
XPSFilter.cxx:1630: warning: unused parameter ‘varlist’
XPSFilter.cxx:1630: warning: unused parameter ‘nrows’
XPSFilter.cxx:1630: warning: unused parameter ‘sepi’
XPSFilter.cxx:1630: warning: unused parameter ‘sepo’
XPSFilter.cxx:1630: warning: unused parameter ‘delim’
XPSFilter.cxx: In member function ‘virtual Int_t XUniFilter::Calculate(TTree*, const char*, TTree*, const char*, Int_t)’:
XPSFilter.cxx:1787: warning: unused variable ‘brchUnit’
XPSFilter.cxx: At global scope:
XPSFilter.cxx:1657: warning: unused parameter ‘leafname’
XPSFilter.cxx:1839: warning: unused parameter ‘outtree’
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c XPSAnalyzer.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSAnalyzer.h:45,
                 from XPSAnalyzer.cxx:42:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSAnalyzer.h:45,
                 from XPSAnalyzer.cxx:42:
XPSData.h:678: warning: unused parameter ‘min’
XPSData.h:678: warning: unused parameter ‘max’
XPSData.h:678: warning: unused parameter ‘var2sort’
XPSData.h:678: warning: unused parameter ‘down’
XPSAnalyzer.cxx:213: warning: unused parameter ‘type’
XPSAnalyzer.cxx:213: warning: unused parameter ‘options’
XPSAnalyzer.cxx:213: warning: unused parameter ‘npars’
XPSAnalyzer.cxx:213: warning: unused parameter ‘pars’
XPSAnalyzer.cxx:227: warning: unused parameter ‘infile’
XPSAnalyzer.cxx:227: warning: unused parameter ‘outfile’
XPSAnalyzer.cxx:227: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:227: warning: unused parameter ‘nrows’
XPSAnalyzer.cxx:227: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:227: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:227: warning: unused parameter ‘sepi’
XPSAnalyzer.cxx:227: warning: unused parameter ‘sepo’
XPSAnalyzer.cxx:227: warning: unused parameter ‘delim’
XPSAnalyzer.cxx:227: warning: unused parameter ‘linebuf’
XPSAnalyzer.cxx:239: warning: unused parameter ‘n’
XPSAnalyzer.cxx:239: warning: unused parameter ‘gid’
XPSAnalyzer.cxx:239: warning: unused parameter ‘intree’
XPSAnalyzer.cxx:239: warning: unused parameter ‘leafname’
XPSAnalyzer.cxx:239: warning: unused parameter ‘outtree’
XPSAnalyzer.cxx:239: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:239: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:239: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:288: warning: unused parameter ‘type’
XPSAnalyzer.cxx:288: warning: unused parameter ‘options’
XPSAnalyzer.cxx:288: warning: unused parameter ‘npars’
XPSAnalyzer.cxx:288: warning: unused parameter ‘pars’
XPSAnalyzer.cxx:302: warning: unused parameter ‘infile’
XPSAnalyzer.cxx:302: warning: unused parameter ‘outfile’
XPSAnalyzer.cxx:302: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:302: warning: unused parameter ‘nrows’
XPSAnalyzer.cxx:302: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:302: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:302: warning: unused parameter ‘sepi’
XPSAnalyzer.cxx:302: warning: unused parameter ‘sepo’
XPSAnalyzer.cxx:302: warning: unused parameter ‘delim’
XPSAnalyzer.cxx:302: warning: unused parameter ‘linebuf’
XPSAnalyzer.cxx:314: warning: unused parameter ‘n’
XPSAnalyzer.cxx:314: warning: unused parameter ‘gid’
XPSAnalyzer.cxx:314: warning: unused parameter ‘intree’
XPSAnalyzer.cxx:314: warning: unused parameter ‘leafname’
XPSAnalyzer.cxx:314: warning: unused parameter ‘outtree’
XPSAnalyzer.cxx:314: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:314: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:314: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:363: warning: unused parameter ‘type’
XPSAnalyzer.cxx:363: warning: unused parameter ‘options’
XPSAnalyzer.cxx:363: warning: unused parameter ‘npars’
XPSAnalyzer.cxx:363: warning: unused parameter ‘pars’
XPSAnalyzer.cxx:377: warning: unused parameter ‘infile’
XPSAnalyzer.cxx:377: warning: unused parameter ‘outfile’
XPSAnalyzer.cxx:377: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:377: warning: unused parameter ‘nrows’
XPSAnalyzer.cxx:377: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:377: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:377: warning: unused parameter ‘sepi’
XPSAnalyzer.cxx:377: warning: unused parameter ‘sepo’
XPSAnalyzer.cxx:377: warning: unused parameter ‘delim’
XPSAnalyzer.cxx:377: warning: unused parameter ‘linebuf’
XPSAnalyzer.cxx:389: warning: unused parameter ‘n’
XPSAnalyzer.cxx:389: warning: unused parameter ‘gid’
XPSAnalyzer.cxx:389: warning: unused parameter ‘intree’
XPSAnalyzer.cxx:389: warning: unused parameter ‘leafname’
XPSAnalyzer.cxx:389: warning: unused parameter ‘outtree’
XPSAnalyzer.cxx:389: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:389: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:389: warning: unused parameter ‘mu’
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c XPSAnalysis.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSAnalysis.h:44,
                 from XPSAnalysis.cxx:63:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSAnalysis.h:44,
                 from XPSAnalysis.cxx:63:
XPSData.h:678: warning: unused parameter ‘min’
XPSData.h:678: warning: unused parameter ‘max’
XPSData.h:678: warning: unused parameter ‘var2sort’
XPSData.h:678: warning: unused parameter ‘down’
In file included from XPSFilter.h:49,
                 from XPSAnalysis.cxx:64:
TStat.h:323: warning: unused parameter ‘x’
TStat.h:324: warning: unused parameter ‘x’
TStat.h:325: warning: unused parameter ‘x’
TStat.h:326: warning: unused parameter ‘x’
In file included from XPSAnalysis.cxx:64:
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:434: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:434: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:120: warning: ‘virtual Int_t XFilter::Calculate(Int_t, TTree**, const char*, TTree*, const char*)’ was hidden
XPSBase.h:434: warning:   by ‘XAlgorithm::Calculate’
XPSAnalysis.cxx:266: warning: unused parameter ‘infile’
XPSAnalysis.cxx:444: warning: unused parameter ‘type’
XPSAnalysis.cxx:964: warning: unused parameter ‘ntree’
XPSAnalysis.cxx:964: warning: unused parameter ‘tree’
XPSAnalysis.cxx:964: warning: unused parameter ‘n’
XPSAnalysis.cxx:964: warning: unused parameter ‘msk’
XPSAnalysis.cxx:1709: warning: unused parameter ‘exten’
XPSAnalysis.cxx:1709: warning: unused parameter ‘n’
XPSAnalysis.cxx:1709: warning: unused parameter ‘names’
XPSAnalysis.cxx:1709: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:1709: warning: unused parameter ‘output’
XPSAnalysis.cxx:1709: warning: unused parameter ‘sep’
XPSAnalysis.cxx:2001: warning: unused parameter ‘exten’
XPSAnalysis.cxx:2001: warning: unused parameter ‘n’
XPSAnalysis.cxx:2001: warning: unused parameter ‘names’
XPSAnalysis.cxx:2001: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2001: warning: unused parameter ‘output’
XPSAnalysis.cxx:2001: warning: unused parameter ‘sep’
XPSAnalysis.cxx:2654: warning: unused parameter ‘n’
XPSAnalysis.cxx:2654: warning: unused parameter ‘tree’
XPSAnalysis.cxx:2791: warning: unused parameter ‘leafname’
XPSAnalysis.cxx:2791: warning: unused parameter ‘outtree’
XPSAnalysis.cxx:2791: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2819: warning: unused parameter ‘exten’
XPSAnalysis.cxx:2819: warning: unused parameter ‘n’
XPSAnalysis.cxx:2819: warning: unused parameter ‘names’
XPSAnalysis.cxx:2819: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2819: warning: unused parameter ‘output’
XPSAnalysis.cxx:2819: warning: unused parameter ‘sep’
XPSAnalysis.cxx:2867: warning: unused parameter ‘n’
XPSAnalysis.cxx:2867: warning: unused parameter ‘names’
XPSAnalysis.cxx:2867: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2867: warning: unused parameter ‘output’
XPSAnalysis.cxx:2867: warning: unused parameter ‘sep’
XPSAnalysis.cxx:2936: warning: unused parameter ‘leafname’
XPSAnalysis.cxx:2936: warning: unused parameter ‘outtree’
XPSAnalysis.cxx:2936: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2964: warning: unused parameter ‘exten’
XPSAnalysis.cxx:2964: warning: unused parameter ‘n’
XPSAnalysis.cxx:2964: warning: unused parameter ‘names’
XPSAnalysis.cxx:2964: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2964: warning: unused parameter ‘output’
XPSAnalysis.cxx:2964: warning: unused parameter ‘sep’
XPSAnalysis.cxx:3006: warning: unused parameter ‘n’
XPSAnalysis.cxx:3006: warning: unused parameter ‘names’
XPSAnalysis.cxx:3006: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3006: warning: unused parameter ‘output’
XPSAnalysis.cxx:3006: warning: unused parameter ‘sep’
XPSAnalysis.cxx:3075: warning: unused parameter ‘leafname’
XPSAnalysis.cxx:3075: warning: unused parameter ‘outtree’
XPSAnalysis.cxx:3075: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3103: warning: unused parameter ‘exten’
XPSAnalysis.cxx:3103: warning: unused parameter ‘n’
XPSAnalysis.cxx:3103: warning: unused parameter ‘names’
XPSAnalysis.cxx:3103: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3103: warning: unused parameter ‘output’
XPSAnalysis.cxx:3103: warning: unused parameter ‘sep’
XPSAnalysis.cxx:3145: warning: unused parameter ‘n’
XPSAnalysis.cxx:3145: warning: unused parameter ‘names’
XPSAnalysis.cxx:3145: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3145: warning: unused parameter ‘output’
XPSAnalysis.cxx:3145: warning: unused parameter ‘sep’
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c rwrapper.cxx
In file included from XPSData.h:47,
                 from rwrapper.cxx:29:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from rwrapper.cxx:29:
XPSData.h:678: warning: unused parameter ‘min’
XPSData.h:678: warning: unused parameter ‘max’
XPSData.h:678: warning: unused parameter ‘var2sort’
XPSData.h:678: warning: unused parameter ‘down’
rwrapper.cxx:1541: warning: unused parameter ‘level’
Generating dictionary xpsDict.cxx...
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c xpsDict.cxx
In file included from xpsDict.h:35,
                 from xpsDict.cxx:16:
TStat.h:323: warning: unused parameter ‘x’
TStat.h:324: warning: unused parameter ‘x’
TStat.h:325: warning: unused parameter ‘x’
TStat.h:326: warning: unused parameter ‘x’
In file included from xpsDict.h:41,
                 from xpsDict.cxx:16:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from xpsDict.h:42,
                 from xpsDict.cxx:16:
XPSData.h:678: warning: unused parameter ‘min’
XPSData.h:678: warning: unused parameter ‘max’
XPSData.h:678: warning: unused parameter ‘var2sort’
XPSData.h:678: warning: unused parameter ‘down’
In file included from xpsDict.h:44,
                 from xpsDict.cxx:16:
XPSHybridizer.h:176: warning: unused parameter ‘n’
XPSHybridizer.h:176: warning: unused parameter ‘x’
XPSHybridizer.h:176: warning: unused parameter ‘y’
XPSHybridizer.h:176: warning: unused parameter ‘z’
XPSHybridizer.h:176: warning: unused parameter ‘dx’
XPSHybridizer.h:176: warning: unused parameter ‘dy’
XPSHybridizer.h:176: warning: unused parameter ‘idx’
XPSHybridizer.h:176: warning: unused parameter ‘nsub’
XPSHybridizer.h:176: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:435: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:176: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:435: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:176: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:435: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:176: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:434: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:176: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:434: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:176: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:434: warning:   by ‘XAlgorithm::Calculate’
In file included from xpsDict.h:45,
                 from xpsDict.cxx:16:
XPSSelector.h:152: warning: ‘virtual Int_t XProbeSelector::Calculate(Int_t, Double_t*, Double_t*, Int_t*)’ was hidden
XPSSelector.h:209: warning:   by ‘XUnitSelector::Calculate’
In file included from xpsDict.h:49,
                 from xpsDict.cxx:16:
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:434: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:434: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:120: warning: ‘virtual Int_t XFilter::Calculate(Int_t, TTree**, const char*, TTree*, const char*)’ was hidden
XPSBase.h:434: warning:   by ‘XAlgorithm::Calculate’
g++ -dynamiclib -single_module -undefined dynamic_lookup -install_name /Users/biocbuild/bbs-2.6-bioc/meat/xps.Rcheck/00_pkg_src/xps/src/xps.so -O2 -m32 TMLMath.o TStat.o StatUtils.o XPSBase.o XPSUtils.o XPSSchemes.o XPSDataTypes.o XPSProjectHandler.o XPSData.o XPSProcessing.o XPSHybridizer.o XPSSelector.o XPSNormalizer.o XPSPreProcessing.o XPSNormation.o XPSFilter.o XPSAnalyzer.o XPSAnalysis.o rwrapper.o xpsDict.o -L/usr/local/root/lib -lCore -lCint -lRIO -lNet -lHist -lGraf -lGraf3d -lGpad -lTree -lRint -lPostscript -lMatrix -lPhysics -lMathCore -lThread -lz -lGui -pthread -Wl,-rpath,/usr/local/root/lib -lm -ldl  -lRIO -lGed -lTreePlayer -lTreeViewer -o  xps.so
installing to /Users/biocbuild/bbs-2.6-bioc/meat/xps.Rcheck/xps/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

Welcome to xps version 1.8.3 
    an R wrapper for XPS - eXpression Profiling System
    (c) Copyright 2001-2010 by Christian Stratowa
    

* DONE (xps)

name	user	system	elapsed
AnalysisTreeSet-class	0.002	0.000	0.003
CallTreeSet-class	0.002	0.000	0.003
DataTreeSet-class	0.003	0.001	0.003
ExprTreeSet-class	0.002	0.000	0.003
Filter-class	0.002	0.000	0.002
FilterTreeSet-class	0.002	0.000	0.003
PreFilter-class	0.071	0.002	0.073
PreFilter-constructor	0.067	0.002	0.069
ProcesSet-class	0.002	0.000	0.003
ProjectInfo-class	0.019	0.000	0.019
ProjectInfo-constructor	0.124	0.003	0.128
SchemeTreeSet-class	0.002	0.000	0.003
TreeSet-class	0.002	0.001	0.002
UniFilter-class	0.029	0.001	0.030
UniFilter-constructor	0.050	0.001	0.051
addData-methods	0.690	0.043	0.987
attachCall-methods	0.537	0.023	0.562
attachExpr-methods	2.158	0.131	2.297
attachInten-methods	0.470	0.098	0.570
attachMask-methods	0.198	0.073	0.272
bgcorrect	1.023	0.200	1.230
boxplot-methods	0.698	0.174	0.874
callFilter-methods	0.041	0.002	0.042
cvFilter-methods	0.020	0.001	0.020
dabg.call	1.818	0.026	1.847
dfw	0.696	0.043	0.743
diffFilter-methods	0.021	0.000	0.022
existsROOTFile	0.001	0.001	0.001
exonLevel	0.002	0.000	0.001
export	0.609	0.107	0.719
export.root	0.536	0.105	0.645
express	2.075	0.140	2.228
exprs-methods	0	0	0
extenPart	0.001	0.000	0.001
farms	0.763	0.050	0.825
fcFilter-methods	0.022	0.001	0.023
firma	0.000	0.001	0.001
firma.expr	0.001	0.000	0.000
firma.score	0.000	0.001	0.001
gapFilter-methods	0.023	0.001	0.024
getChipName	0.005	0.000	0.006
getChipType	0.005	0.000	0.005
getDatatype	0.001	0.000	0.001
getNameType	0.005	0.000	0.005
getNumberTrees	0.005	0.001	0.005
getProbeInfo	0.003	0.000	0.003
getTreeNames	0.014	0.001	0.015
highFilter-methods	0.018	0.001	0.019
hist-methods	0.665	0.174	0.842
image.dev	0.634	0.173	0.810
import.data	0.296	0.033	0.353
import.exon.scheme	0.001	0.001	0.001
import.expr.scheme	0.001	0.000	0.000
import.genome.scheme	0.000	0.001	0.000
ini.call	0.813	0.049	0.875
intensity-methods	0	0	0
isROOTFile	0.000	0.000	0.001
lowFilter-methods	0.019	0.001	0.020
madFilter-methods	0.017	0.001	0.018
mas4	1.018	0.067	1.111
mas5	1.101	0.068	1.207
mas5.call	0.435	0.022	0.458
mboxplot-methods	0.637	0.175	0.814
metaProbesets	0.001	0.000	0.001
namePart	0.001	0.000	0.001
normalize	2.131	0.133	2.299
nuseplot-methods	0.068	0.005	0.073
pm-methods	0.740	0.187	0.929
pmplot-methods	0.634	0.178	0.813
prefilter	0.001	0.000	0.001
presCall-methods	0.000	0.001	0.001
quantileFilter-methods	0.018	0.000	0.019
ratioFilter-methods	0.017	0.000	0.017
rawCELName-methods	0.054	0.002	0.057
rleplot-methods	0.067	0.005	0.072
rma	2.105	0.137	2.268
root.call	0.455	0.030	0.510
root.data	0.229	0.023	0.257
root.density	0	0	0
root.expr	2.093	0.121	2.223
root.graph1D	0.000	0.000	0.001
root.graph2D	0.000	0.000	0.001
root.hist1D	0.000	0.001	0.000
root.hist2D	0	0	0
root.hist3D	0	0	0
root.image	0.000	0.000	0.001
root.merge.data	0.292	0.025	0.326
root.mvaplot	0.000	0.000	0.001
root.profile	0	0	0
root.scheme	0.041	0.002	0.043
summarize	2.151	0.134	2.308
type2Exten	0.001	0.000	0.000
uniTest-methods	0.023	0.001	0.023
unifilter	0.000	0.001	0.000
unitestFilter-methods	0.021	0.001	0.022
validTreetype	0	0	0
varFilter-methods	0.019	0.001	0.019

Summary

Command output