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Package 374/389HostnameOS / ArchBUILDCHECKBUILD BIN
topGO 1.16.2
Adrian Alexa
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/topGO
Last Changed Rev: 47312 / Revision: 49923
Last Changed Date: 2010-06-04 07:16:31 -0700 (Fri, 04 Jun 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: topGO
Version: 1.16.2
Command: /home/biocbuild/bbs-2.6-bioc/R/bin/R CMD check --no-vignettes --timings topGO_1.16.2.tar.gz
StartedAt: 2010-10-04 20:11:14 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 20:13:22 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 128.2 seconds
RetCode: 0
Status:  OK 
CheckDir: topGO.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.6-bioc/meat/topGO.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'topGO/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'topGO' version '1.16.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'topGO' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

topGO.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package 'topGO' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: AnnotationDbi
Loading required package: DBI
Package SparseM (0.86) loaded.
	   To cite, see citation("SparseM")


Attaching package: 'SparseM'

The following object(s) are masked from 'package:base':

    backsolve

Creating a new generic function for "print" in "topGO"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.

* DONE (topGO)

topGO.Rcheck/topGO-Ex.timings:

nameusersystemelapsed
GOdata0.0600.0000.065
annFUN1.3880.0402.280
classicCount-class0.0000.0040.000
classicExpr-class0.0000.0000.001
classicScore-class0.0080.0000.008
dagFunctions000
diagnosticMethods0.8720.0000.872
elimExpr-class0.0000.0000.001
elimScore-class0.0000.0000.001
geneList0.0040.0000.004
getPvalues4.2680.1684.489
getSigGroups6.7690.0126.814
groupGOTerms0.5320.0040.536
inducedGraph0.1000.0000.098
parentChild-class0.0000.0040.002
printGraph-methods0.0000.0000.001
topGOdata-class7.2600.0607.323
topGOresult-class0.0920.0000.095