Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P [Q] R  S  T  U  V  W  X  Y  Z 

Package 296/389HostnameOS / ArchBUILDCHECKBUILD BIN
quantsmooth 1.14.0
Jan Oosting
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/quantsmooth
Last Changed Rev: 46401 / Revision: 49923
Last Changed Date: 2010-04-22 11:21:23 -0700 (Thu, 22 Apr 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: quantsmooth
Version: 1.14.0
Command: E:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD check --no-vignettes --timings quantsmooth_1.14.0.tar.gz
StartedAt: 2010-10-04 19:41:29 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 19:42:12 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 43.0 seconds
RetCode: 0
Status:  OK  
CheckDir: quantsmooth.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.6-bioc/meat/quantsmooth.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'quantsmooth/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'quantsmooth' version '1.14.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'quantsmooth' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
grid.chromosome: no visible binding for global variable 'chrom.bands'
lengthChromosome: no visible binding for global variable 'chrom.bands'
paintCytobands: no visible binding for global variable 'chrom.bands'
position2Cytoband: no visible binding for global variable 'chrom.bands'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

quantsmooth.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package 'quantsmooth' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: SparseM
Package SparseM (0.86) loaded.
	   To cite, see citation("SparseM")


Attaching package: 'SparseM'

The following object(s) are masked from 'package:base':

    backsolve

Loading required package: grid
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (quantsmooth)

quantsmooth.Rcheck/quantsmooth-Ex.timings:

nameusersystemelapsed
drawSimpleChrom0.010.000.02
getChangedRegions0.190.000.19
getLambdaMin0.800.030.82
grid.chromosome0.060.000.18
lengthChromosome0.130.000.14
numericCHR000
paintCytobands0.090.000.09
plotSmoothed0.140.020.15
position2Cytoband0.060.010.08
quantsmooth0.010.000.01
quantsmooth.cv0.030.020.05
quantsmooth.seg0.000.020.01