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Package 123/389HostnameOS / ArchBUILDCHECKBUILD BIN
flowCore 1.14.1
F. Hahne
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/flowCore
Last Changed Rev: 46647 / Revision: 49923
Last Changed Date: 2010-04-30 12:30:16 -0700 (Fri, 30 Apr 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: flowCore
Version: 1.14.1
Command: E:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD check --no-vignettes --timings flowCore_1.14.1.tar.gz
StartedAt: 2010-10-04 18:00:09 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 18:03:29 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 200.1 seconds
RetCode: 0
Status:  OK  
CheckDir: flowCore.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.6-bioc/meat/flowCore.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowCore/DESCRIPTION' ... OK
* this is package 'flowCore' version '1.14.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'flowCore' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

flowCore.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package 'flowCore' ...
** libs
  making DLL ...
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include"         -O3 -Wall  -std=gnu99 -c biexponential.c -o biexponential.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include"         -O3 -Wall  -std=gnu99 -c inPolygon.c -o inPolygon.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include"         -O3 -Wall  -std=gnu99 -c inPolytope.c -o inPolytope.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include"         -O3 -Wall  -std=gnu99 -c init.c -o init.o
gcc -shared -s -static-libgcc -o flowCore.dll tmp.def biexponential.o inPolygon.o inPolytope.o init.o -LE:/biocbld/bbs-2.6-bioc/R/bin -lR
installing to E:/biocbld/bbs-2.6-bioc/meat/flowCore.Rcheck/flowCore/libs
  ... done
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
Scalable Robust Estimators with High Breakdown Point (version 1.1-00)
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (flowCore)

flowCore.Rcheck/flowCore-Ex.timings:

nameusersystemelapsed
EHtrans-class0.20.00.2
Subset-methods1.330.031.36
actionItem-class000
arcsinhTransform0.170.000.18
asinht-class0.060.000.06
biexponentialTransform15.00 0.2515.27
boundaryFilter-class0.300.010.31
characterOrTransformation-class000
coerce0.110.020.12
compensateActionItem-class000
compensateView-class000
compensatedParameter-class0.330.030.36
compensation-class0.760.000.76
curv1Filter-class1.030.011.05
curv2Filter-class3.910.023.92
dg1polynomial-class0.060.000.06
each_col-methods0.080.000.08
ellipsoidGate0.130.020.14
exponential-class0.060.000.06
expressionFilter-class0.140.000.14
fcReference-class000
filter-methods1.330.011.34
filter-on-methods0.260.000.27
filterList-class0.020.000.02
filterResult-class000
filterResultList-class2.250.042.29
filterSet-class0.090.000.10
filterSummary-class0.640.000.64
filterSummaryList-class2.040.002.04
flowFrame-class5.400.075.46
flowSet-class5.250.005.27
fsApply0.350.000.34
gateActionItem-class000
gateView-class000
hyperlog-class1.850.001.86
identifier-methods0.070.000.07
inverseLogicleTransform0.900.010.92
invsplitscale-class0.070.000.06
keyword-methods0.980.031.02
kmeansFilter0.360.000.36
linearTransform0.080.020.09
lnTransform3.290.123.42
logTransform0.210.000.20
logarithm-class0.080.000.08
logicalFilterResult-class000
logicleTransform0.900.030.94
manyFilterResult-class000
multipleFilterResult-class000
norm2Filter-class0.280.000.33
normalizeActionItem-class000
normalizeView-class000
parameters-methods0.070.000.06
polygonGate0.140.000.14
quadGate0.40.00.4
quadratic-class0.070.000.07
quadraticTransform0.070.020.09
ratio-class0.050.020.06
read.FCS0.110.000.11
read.FCSheader0.020.000.01
read.flowSet0.230.010.25
rectangleGate0.250.000.25
sampleFilter-class0.120.000.13
scaleTransform0.100.000.09
singleParameterTransform-class000
sinht-class0.060.000.06
split-methods1.940.021.95
splitScaleTransform3.400.083.49
splitscale-class0.070.000.06
squareroot-class0.080.000.08
subsettingActionItem-class000
subsettingView-class000
timeFilter-class2.980.063.04
transform-class000
transformActionItem-class000
transformFilter-class0.190.020.22
transformList-class0.90.00.9
transformMap-class000
transformView-class0.020.000.02
truncateTransform0.090.000.09
unitytransform-class0.070.000.07
view-class000
workFlow-class000
write.FCS0.120.000.12
write.flowSet1.270.081.38