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Package 314/389HostnameOS / ArchBUILDCHECKBUILD BIN
Ringo 1.12.0
J. Toedling
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/Ringo
Last Changed Rev: 46401 / Revision: 49923
Last Changed Date: 2010-04-22 11:21:23 -0700 (Thu, 22 Apr 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: Ringo
Version: 1.12.0
Command: E:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD check --no-vignettes --timings Ringo_1.12.0.tar.gz
StartedAt: 2010-10-04 19:53:59 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 19:56:05 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 125.6 seconds
RetCode: 0
Status:  OK  
CheckDir: Ringo.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.6-bioc/meat/Ringo.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Ringo/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Ringo' version '1.12.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Ringo' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
oneChannelVSN: no visible global function definition for 'vsnMatrix'
sigGOTable: no visible binding for global variable 'p.value'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

Ringo.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package 'Ringo' ...
** libs
  making DLL ...
g++ -I"E:/biocbld/bbs-2.6-bioc/R/include"         -O2 -Wall  -c mmeansd.cpp -o mmeansd.o
g++ -I"E:/biocbld/bbs-2.6-bioc/R/include"         -O2 -Wall  -c mmedian.cpp -o mmedian.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include"         -O3 -Wall  -std=gnu99 -c region_overlap.c -o region_overlap.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include"         -O3 -Wall  -std=gnu99 -c ringo_init.c -o ringo_init.o
g++ -shared -s -static-libgcc -o Ringo.dll tmp.def mmeansd.o mmedian.o region_overlap.o ringo_init.o -LE:/biocbld/bbs-2.6-bioc/R/bin -lR
installing to E:/biocbld/bbs-2.6-bioc/meat/Ringo.Rcheck/Ringo/libs
  ... done
** R
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: lattice

Attaching package: 'Matrix'

The following object(s) are masked from 'package:base':

    det

Creating a new generic function for "plot" in "Ringo"
Creating a new generic function for "get" in "Ringo"
Creating a new generic function for "ls" in "Ringo"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (Ringo)

Ringo.Rcheck/Ringo-Ex.timings:

nameusersystemelapsed
arrayImage0.250.000.25
asExprSet0.360.020.37
autocorr0.110.000.11
cherByThreshold0.010.000.02
cherClass0.250.010.26
chipAlongChrom0.350.000.35
chipAlongChromOld0.030.020.05
computeRunningMedians0.370.000.39
compute_gc000
compute_sliding_t0.100.020.11
corrPlot0.030.010.06
exportCherList000
features2Probes0.790.000.83
findChersOnSmoothed0.280.000.28
ftr2xys000
newCER000
nonzero0.020.000.04
plotAutocorr000
plotBM0.020.000.01
posToProbeAnnoEnvironment0.060.000.06
preprocess0.700.030.91
probeAnnoClass0.050.000.05
qopS4000
quantilesOverPositions0.580.000.57
readNimblegen0.250.020.27
regionoverlap0.010.000.02
relateCERs000
sigGOTable000
sliding_meansd000
sliding_quantile0.030.000.03
twoGaussiansNull0.280.000.28
upperBoundNull0.110.000.11
validProbeAnno0.040.000.03