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Package 333/389HostnameOS / ArchBUILDCHECKBUILD BIN
RWebServices 1.12.0
Martin Morgan
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/RWebServices
Last Changed Rev: 46401 / Revision: 49923
Last Changed Date: 2010-04-22 11:21:23 -0700 (Thu, 22 Apr 2010)
wilson1 Linux (openSUSE 11.1) / x86_64 [ OK ] OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 N O T   S U P P O R T E D
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64 N O T   S U P P O R T E D
pelham Mac OS X Leopard (10.5.8) / i386 N O T   S U P P O R T E D

Summary

Package: RWebServices
Version: 1.12.0
Command: /home/biocbuild/bbs-2.6-bioc/R/bin/R CMD build RWebServices
StartedAt: 2010-10-04 14:04:42 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 14:04:52 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 10.5 seconds
RetCode: 0
Status:  OK 
PackageFile: RWebServices_1.12.0.tar.gz
PackageFileSize: 1.96 MiB

Command output

* checking for file 'RWebServices/DESCRIPTION' ... OK
* preparing 'RWebServices':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running cleanup
rm: cannot remove `config.log': No such file or directory
rm: cannot remove `config.status': No such file or directory
rm: cannot remove `inst/scripts/RWebServicesEnv.properties': No such file or directory
* installing the package to re-build vignettes
* installing *source* package 'RWebServices' ...

Guessing SJava home: /tmp/Rinst1874144918/SJava

checking Java support in R... configure: creating ./config.status
config.status: creating inst/scripts/RWebServicesEnv.properties
config.status: creating src/Makevars
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -I/usr/lib64/jvm/java/include -I/usr/lib64/jvm/java/include/linux -I/usr/local/include    -fpic  -g -O2 -c RWebServicesConverters.c -o RWebServicesConverters.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -I/usr/lib64/jvm/java/include -I/usr/lib64/jvm/java/include/linux -I/usr/local/include    -fpic  -g -O2 -c init.c -o init.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o RWebServices.so RWebServicesConverters.o init.o -L/usr/lib64/jvm/java-1.6.0-sun-1.6.0/jre/lib/amd64/server -L/usr/lib64/jvm/java-1.6.0-sun-1.6.0/jre/lib/amd64 -L/usr/lib64/jvm/java-1.6.0-sun-1.6.0/jre/../lib/amd64 -L/usr/local/lib64 -L/usr/local/lib/root -L -L/usr/java/packages/lib/amd64 -L/lib -L/usr/lib -ljvm -L/home/biocbuild/bbs-2.6-bioc/R/lib -lR
/usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
/usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/bin/ld: skipping incompatible /usr/lib/libc.a when searching for -lc
installing to /tmp/Rinst1874144918/RWebServices/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (RWebServices)
* creating vignettes ... OK
* cleaning src
make: Nothing to be done for `clean'.
* running cleanup
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
WARNING: directory 'RWebServices/inst/cagrid/schemas' is empty
* building 'RWebServices_1.12.0.tar.gz'