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Package 250/389HostnameOS / ArchBUILDCHECKBUILD BIN
MotIV 1.1.3
Eloi Mercier , Raphael Gottardo
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/MotIV
Last Changed Rev: 47149 / Revision: 49923
Last Changed Date: 2010-05-26 11:24:55 -0700 (Wed, 26 May 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK [ OK ]
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: MotIV
Version: 1.1.3
Command: E:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD INSTALL --build --library=MotIV.buildbin-libdir MotIV_1.1.3.tar.gz
StartedAt: 2010-10-04 21:02:21 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 21:03:31 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 70.4 seconds
RetCode: 0
Status:  OK  
PackageFile: MotIV_1.1.3.zip
PackageFileSize: 12.05 MiB

Command output

* installing *source* package 'MotIV' ...

  Using auto-selected zip option '--use-zip-data'


   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
  making DLL ...
g++ -I"E:/biocbld/bbs-2.6-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -IE:/biocbld/bbs-2.6-bioc/R/src/include -IC:/gsl/include        -O2 -Wall  -c Alignment.cpp -o Alignment.o
Alignment.cpp: In member function 'virtual double SmithWatermanAffine::AlignMotifs(Motif*, Motif*, int&, int&, int&, bool&)':
Alignment.cpp:789: warning: 'forScore' may be used uninitialized in this function
Alignment.cpp: In member function 'virtual double NeedlemanWunsch::AlignMotifs(Motif*, Motif*, int&, int&, int&, bool&)':
Alignment.cpp:588: warning: 'forScore' may be used uninitialized in this function
Alignment.cpp: In member function 'virtual double SmithWatermanUngappedExtended::AlignMotifs(Motif*, Motif*, int&, int&, int&, bool&)':
Alignment.cpp:422: warning: 'forScore' may be used uninitialized in this function
Alignment.cpp: In member function 'virtual double SmithWaterman::AlignMotifs(Motif*, Motif*, int&, int&, int&, bool&)':
Alignment.cpp:240: warning: 'revScore' may be used uninitialized in this function
Alignment.cpp:240: warning: 'forScore' may be used uninitialized in this function
g++ -I"E:/biocbld/bbs-2.6-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -IE:/biocbld/bbs-2.6-bioc/R/src/include -IC:/gsl/include        -O2 -Wall  -c ColumnComp.cpp -o ColumnComp.o
g++ -I"E:/biocbld/bbs-2.6-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -IE:/biocbld/bbs-2.6-bioc/R/src/include -IC:/gsl/include        -O2 -Wall  -c DeclareAll.cpp -o DeclareAll.o
g++ -I"E:/biocbld/bbs-2.6-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -IE:/biocbld/bbs-2.6-bioc/R/src/include -IC:/gsl/include        -O2 -Wall  -c Motif.cpp -o Motif.o
g++ -I"E:/biocbld/bbs-2.6-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -IE:/biocbld/bbs-2.6-bioc/R/src/include -IC:/gsl/include        -O2 -Wall  -c MotifMatch.cpp -o MotifMatch.o
g++ -I"E:/biocbld/bbs-2.6-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -IE:/biocbld/bbs-2.6-bioc/R/src/include -IC:/gsl/include        -O2 -Wall  -c PlatformSupport.cpp -o PlatformSupport.o
g++ -I"E:/biocbld/bbs-2.6-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -IE:/biocbld/bbs-2.6-bioc/R/src/include -IC:/gsl/include        -O2 -Wall  -c RandPSSMGen.cpp -o RandPSSMGen.o
g++ -I"E:/biocbld/bbs-2.6-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -IE:/biocbld/bbs-2.6-bioc/R/src/include -IC:/gsl/include        -O2 -Wall  -c generateScoresDB.cpp -o generateScoresDB.o
g++ -shared -s -static-libgcc -o MotIV.dll tmp.def Alignment.o ColumnComp.o DeclareAll.o Motif.o MotifMatch.o PlatformSupport.o RandPSSMGen.o generateScoresDB.o -lws2_32 -LC:/gsl/bin -lgsl -lgslcblas -lm -LE:/biocbld/bbs-2.6-bioc/R/bin -lR
installing to E:/biocbld/bbs-2.6-bioc/meat/MotIV.buildbin-libdir/MotIV/libs
  ... done
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for "plot" in "MotIV"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MotIV' as MotIV_1.1.3.zip

* DONE (MotIV)