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Package 203/389HostnameOS / ArchBUILDCHECKBUILD BIN
KCsmart 2.6.0
Jorma de Ronde
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/KCsmart
Last Changed Rev: 46401 / Revision: 49923
Last Changed Date: 2010-04-22 11:21:23 -0700 (Thu, 22 Apr 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: KCsmart
Version: 2.6.0
Command: D:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD check --no-vignettes --timings KCsmart_2.6.0.tar.gz
StartedAt: 2010-10-04 17:22:13 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 17:31:54 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 581.2 seconds
RetCode: 0
Status:  OK  
CheckDir: KCsmart.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'D:/biocbld/bbs-2.6-bioc/meat/KCsmart.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'KCsmart/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'KCsmart' version '2.6.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'KCsmart' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: calcSpm.Rd:49-50: Dropping empty section \note
prepare_Rd: calcSpm.Rd:47: Dropping empty section \references
prepare_Rd: calcSpmCollection.Rd:51-52: Dropping empty section \note
prepare_Rd: calcSpmCollection.Rd:49: Dropping empty section \references
prepare_Rd: compareSpmCollection.Rd:28-29: Dropping empty section \note
prepare_Rd: compareSpmCollection.Rd:26: Dropping empty section \references
prepare_Rd: getSigRegionsCompKC.Rd:30-31: Dropping empty section \note
prepare_Rd: getSigRegionsCompKC.Rd:28: Dropping empty section \references
prepare_Rd: getSigSegments.Rd:29-30: Dropping empty section \note
prepare_Rd: hsSampleData.Rd:12-13: Dropping empty section \references
prepare_Rd: idPoints.Rd:29-30: Dropping empty section \note
prepare_Rd: plot.Rd:39-40: Dropping empty section \details
prepare_Rd: plot.Rd:51-52: Dropping empty section \note
prepare_Rd: plotScaleSpace.Rd:25-26: Dropping empty section \note
prepare_Rd: write.table.Rd:73-75: Dropping empty section \value
prepare_Rd: write.table.Rd:77-78: Dropping empty section \note
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

KCsmart.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package 'KCsmart' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: multtest
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: splines
Creating a new generic function for "sort" in "KCsmart"
Creating a new generic function for "unlist" in "KCsmart"
Creating a new generic function for "write.table" in "KCsmart"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (KCsmart)

KCsmart.Rcheck/KCsmart-Ex.timings:

nameusersystemelapsed
KCsmart-package123.00 5.30128.39
calcSpm9.060.239.30
calcSpmCollection83.14 2.1385.31
compKc-class000
compKcSigRegions-class000
compareSpmCollection83.35 2.7286.19
findSigLevelFdr18.08 0.5618.65
findSigLevelTrad17.93 0.6218.60
getSigRegionsCompKC89.58 3.3092.92
getSigSegments17.44 0.4117.86
idPoints0.020.000.01
plot17.90 0.4018.32
plotScaleSpace37.89 1.6439.56
samplePointMatrix-class000
sigSegments-class0.020.000.01
spmCollection-class000
write.table18.09 0.2718.38