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Package 6/353HostnameOS / ArchBUILDCHECKBUILD BIN
affy 1.24.2
Rafael A. Irizarry
Snapshot Date: 2009-12-13 23:30:35 -0800 (Sun, 13 Dec 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_5/madman/Rpacks/affy
Last Changed Rev: 42877 / Revision: 43539
Last Changed Date: 2009-11-09 13:09:08 -0800 (Mon, 09 Nov 2009)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]
Package: affy
Version: 1.24.2
Command: /Users/biocbuild/BBS/utils/build-universal.sh affy_1.24.2.tar.gz /Library/Frameworks/R.framework/Versions/2.10/Resources/bin/R affy.buildbin-libdir
StartedAt: 2009-12-14 07:22:50 -0800 (Mon, 14 Dec 2009)
EndedAt: 2009-12-14 07:23:16 -0800 (Mon, 14 Dec 2009)
EllapsedTime: 26.4 seconds
RetCode: 0
Status: OK
PackageFile: affy_1.24.2.tgz
PackageFileSize: 1.398 MiB

Command output

                INSTALLATION WITH 'R CMD INSTALL --preclean --library=affy.buildbin-libdir affy_1.24.2.tar.gz'

* installing *source* package ‘affy’ ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for main in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DHAVE_ZLIB=1  -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/preprocessCore/include"   -fPIC  -g -O2 -Wall -c chipbackground.c -o chipbackground.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DHAVE_ZLIB=1  -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/preprocessCore/include"   -fPIC  -g -O2 -Wall -c getall_locations.c -o getall_locations.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DHAVE_ZLIB=1  -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/preprocessCore/include"   -fPIC  -g -O2 -Wall -c mas5calls.c -o mas5calls.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DHAVE_ZLIB=1  -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/preprocessCore/include"   -fPIC  -g -O2 -Wall -c rma2.c -o rma2.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DHAVE_ZLIB=1  -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/preprocessCore/include"   -fPIC  -g -O2 -Wall -c rma_common.c -o rma_common.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o affy.so chipbackground.o getall_locations.o mas5calls.o rma2.o rma_common.o -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** demo
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "open" in "affy"
Creating a new generic function for "close" in "affy"
Creating a new generic function for "colnames" in "affy"
Creating a new generic function for "barplot" in "affy"
** help
*** installing help indices
** building package indices ...
* DONE (affy)

                INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --preclean --library=affy.buildbin-libdir --libs-only affy_1.24.2.tar.gz'

* installing *source* package ‘affy’ ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for main in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
** arch - ppc
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -DHAVE_ZLIB=1  -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/preprocessCore/include"   -fPIC  -g -O2 -c chipbackground.c -o chipbackground.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -DHAVE_ZLIB=1  -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/preprocessCore/include"   -fPIC  -g -O2 -c getall_locations.c -o getall_locations.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -DHAVE_ZLIB=1  -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/preprocessCore/include"   -fPIC  -g -O2 -c mas5calls.c -o mas5calls.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -DHAVE_ZLIB=1  -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/preprocessCore/include"   -fPIC  -g -O2 -c rma2.c -o rma2.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -DHAVE_ZLIB=1  -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/preprocessCore/include"   -fPIC  -g -O2 -c rma_common.c -o rma_common.o
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o affy.so chipbackground.o getall_locations.o mas5calls.o rma2.o rma_common.o -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
* DONE (affy)

                INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --library=affy.buildbin-libdir --libs-only affy_1.24.2.tar.gz'

* installing *source* package ‘affy’ ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for main in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
** arch - x86_64
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DHAVE_ZLIB=1  -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/preprocessCore/include"   -fPIC  -g -O2 -Wall -c chipbackground.c -o chipbackground.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DHAVE_ZLIB=1  -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/preprocessCore/include"   -fPIC  -g -O2 -Wall -c getall_locations.c -o getall_locations.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DHAVE_ZLIB=1  -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/preprocessCore/include"   -fPIC  -g -O2 -Wall -c mas5calls.c -o mas5calls.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DHAVE_ZLIB=1  -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/preprocessCore/include"   -fPIC  -g -O2 -Wall -c rma2.c -o rma2.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DHAVE_ZLIB=1  -I/usr/local/include -I"/Library/Frameworks/R.framework/Resources/library/preprocessCore/include"   -fPIC  -g -O2 -Wall -c rma_common.c -o rma_common.o
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o affy.so chipbackground.o getall_locations.o mas5calls.o rma2.o rma_common.o -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
* DONE (affy)